Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID RNF115 27246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 145687066 145687066 + Missense_Mutation SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 GALE 2582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 1 24122442 24122442 + Silent SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ERBB3 2065 hgsc.bcm.edu;mdanderson.org 37 12 56491706 56491706 + Silent SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PHLDA1 22822 hgsc.bcm.edu 37 12 76424940 76424940 + Silent SNP C C T rs80344196 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 FMN1 342184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 15 33359287 33359287 + Missense_Mutation SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 WDR72 256764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 15 53997272 53997272 + Missense_Mutation SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ADAMTS7 11173 hgsc.bcm.edu 37 15 79058942 79058944 + In_Frame_Del DEL GCA GCA - novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 GCA GCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 SLC9A5 6553 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 16 67293560 67293560 + Missense_Mutation SNP C C A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PLEKHM1 9842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 43531447 43531447 + Missense_Mutation SNP C C G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 AFF3 3899 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 2 100167950 100167950 + Missense_Mutation SNP C C T rs138104794 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 129281737 129281737 + Missense_Mutation SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 MAMLD1 10046 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 X 149638778 149638778 + Silent SNP A A T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 RBMS1 5937 broad.mit.edu;hgsc.bcm.edu 37 2 161135123 161135123 + Missense_Mutation SNP G G T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 FGA 2243 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 4 155506781 155506781 + Missense_Mutation SNP G G C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 CPSF3L 54973 broad.mit.edu 37 1 1254710 1254710 + Missense_Mutation SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 CNKSR1 10256 broad.mit.edu 37 1 26509852 26509852 + Nonsense_Mutation SNP C C T rs200619424 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 LDB3 11155 broad.mit.edu 37 10 88476140 88476140 + Missense_Mutation SNP A A C rs143163993 alternate_allele TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 FAM186A 121006 broad.mit.edu 37 12 50746922 50746922 + Silent SNP T T G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 DIP2B 57609 broad.mit.edu 37 12 51072520 51072520 + Silent SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 GNS 2799 broad.mit.edu 37 12 65115476 65115476 + Missense_Mutation SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 NAA30 122830 broad.mit.edu 37 14 57863498 57863498 + Missense_Mutation SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 TIMM9 26520 broad.mit.edu;mdanderson.org;bcgsc.ca 37 14 58878663 58878663 + Missense_Mutation SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 VPS13C 54832 broad.mit.edu 37 15 62243167 62243167 + Frame_Shift_Del DEL G G - novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 C15orf39 56905 broad.mit.edu 37 15 75503149 75503149 + Missense_Mutation SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ADAMTS17 170691 broad.mit.edu;mdanderson.org;bcgsc.ca 37 15 100672306 100672306 + Missense_Mutation SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 TSC2 7249 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 16 2129290 2129290 + Missense_Mutation SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ERCC4 2072 broad.mit.edu 37 16 14041897 14041897 + Missense_Mutation SNP A A T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ERN2 10595 broad.mit.edu 37 16 23716452 23716452 + Silent SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PKD1L3 342372 broad.mit.edu 37 16 72003881 72003881 + Missense_Mutation SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 BECN1 8678 broad.mit.edu 37 17 40970314 40970314 + Missense_Mutation SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 COL5A3 50509 broad.mit.edu 37 19 10091506 10091506 + Silent SNP A A C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 FRG1B 284802 broad.mit.edu 37 20 29628283 29628283 + RNA SNP G G C rs200164543 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ATP5E 514 broad.mit.edu 37 20 57605434 57605434 + Missense_Mutation SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 TMPRSS15 5651 broad.mit.edu 37 21 19751610 19751610 + Silent SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 CECR2 27443 broad.mit.edu 37 22 18029228 18029228 + Silent SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 USP19 10869 broad.mit.edu;mdanderson.org;bcgsc.ca 37 3 49153200 49153200 + Missense_Mutation SNP G G T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 GHSR 2693 broad.mit.edu 37 3 172165985 172165985 + Silent SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ZCCHC4 29063 broad.mit.edu 37 4 25353254 25353254 + Frame_Shift_Del DEL T T - novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 GUCY1A3 2982 broad.mit.edu;mdanderson.org 37 4 156643251 156643251 + Missense_Mutation SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 HOMER1 9456 broad.mit.edu 37 5 78672018 78672018 + Missense_Mutation SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 HARS2 23438 broad.mit.edu 37 5 140073223 140073223 + Silent SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PCDHGA2 56113 broad.mit.edu 37 5 140720439 140720439 + Missense_Mutation SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 AHI1 54806 broad.mit.edu 37 6 135787070 135787070 + Missense_Mutation SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PARK2 5071 broad.mit.edu 37 6 162394348 162394348 + Silent SNP C C A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PILRB 29990 broad.mit.edu;bcgsc.ca 37 7 99956366 99956366 + Missense_Mutation SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PPP2R2A 5520 broad.mit.edu 37 8 26196504 26196504 + Splice_Site SNP G G T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PTPLAD2 401494 broad.mit.edu 37 9 21007046 21007046 + Frame_Shift_Del DEL T T - novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 BCOR 54880 broad.mit.edu 37 X 39913558 39913558 + Silent SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 LRFN3 79414 broad.mit.edu 37 19 36430411 36430412 + Frame_Shift_Ins INS - - C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 DMWD 1762 broad.mit.edu 37 19 46289153 46289154 + Frame_Shift_Ins INS - - G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 FAM120A 23196 broad.mit.edu 37 9 96233575 96233576 + Frame_Shift_Ins INS - - A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ARFGAP3 26286 ucsc.edu;mdanderson.org;bcgsc.ca 37 22 43231465 43231465 + Missense_Mutation SNP T T A rs142981529 byfrequency;alternate_allele TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 BCAN 63827 ucsc.edu;bcgsc.ca 37 1 156626107 156626107 + Missense_Mutation SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 OR2B11 127623 ucsc.edu 37 1 247615262 247615262 + Missense_Mutation SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 SOCS7 30837 ucsc.edu 37 17 36552111 36552111 + Missense_Mutation SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 TMEM41A 90407 ucsc.edu 37 3 185214712 185214712 + Silent SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 TSPEAR 54084 ucsc.edu 37 21 45919681 45919681 + Silent SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 USP45 85015 ucsc.edu 37 6 99930673 99930673 + Silent SNP T T C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ZCCHC24 219654 ucsc.edu;bcgsc.ca 37 10 81205166 81205166 + Missense_Mutation SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 CPPED1 55313 mdanderson.org 37 16 12875238 12875238 + Silent SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 DPAGT1 1798 mdanderson.org 37 11 118967931 118967931 + Missense_Mutation SNP A A C novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 FCGBP 8857 mdanderson.org 37 19 40376900 40376900 + Missense_Mutation SNP G G T rs2542321 bycluster;byfrequency TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 FRG1B 284802 mdanderson.org 37 20 29631557 29631557 + RNA SNP A A G rs1803595 bycluster;by2hit2allele TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 HLA-DQB1 3119 mdanderson.org 37 6 32634331 32634331 + Silent SNP G G C rs1049058 byfrequency TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 HYDIN 54768 mdanderson.org 37 16 71163579 71163579 + Silent SNP C C T rs929311 bycluster;byfrequency;by2hit2allele TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 KRT17 3872 mdanderson.org 37 17 39775939 39775939 + Silent SNP C C T novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 KRTAP4-8 728224 mdanderson.org 37 17 39254142 39254142 + Silent SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 MADCAM1 8174 mdanderson.org 37 19 501786 501786 + Missense_Mutation SNP C C A rs77264553 byfrequency TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 MUC5B 727897 mdanderson.org 37 11 1258240 1258241 + Silent DNP CA CA TG rs79773885 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 MUC6 4588 mdanderson.org 37 11 1016684 1016684 + Silent SNP G G A novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PRSS1 5644 mdanderson.org 37 7 142458409 142458409 + Missense_Mutation SNP C C G rs200665515 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 PRSS1 5644 mdanderson.org 37 7 142458412 142458412 + Missense_Mutation SNP C C T rs202003805 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 ZNF812 729648 bcgsc.ca 37 19 9801747 9801747 + Missense_Mutation SNP T T G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 UBLCP1 134510 bcgsc.ca 37 5 158696939 158696939 + Missense_Mutation SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 HLA-DQB1 3119 bcgsc.ca 37 6 32634350 32634350 + Missense_Mutation SNP T T C rs36222414 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 GDF6 392255 bcgsc.ca 37 8 97172838 97172838 + Missense_Mutation SNP A A G novel TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 MAGEB6 158809 bcgsc.ca 37 X 26212262 26212262 + Missense_Mutation SNP C C T rs4272533 TCGA-KL-8342-01A-11D-2310-10 TCGA-KL-8342-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0 f38fc6ac-2af8-4d89-a514-4e2c5fdf08de 0d9307db-aee2-48b3-a11e-d570b626f1a0