Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID PPP1R13B 23368 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 14 104205041 104205041 + Missense_Mutation SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 KIAA1737 85457 hgsc.bcm.edu 37 14 77580242 77580243 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 EARS2 124454 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 16 23546345 23546345 + Silent SNP C C A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 C19orf18 147685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 19 58472845 58472845 + Missense_Mutation SNP T T G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 TSC22D2 9819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 3 150127405 150127405 + Silent SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 CAP2 10486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 6 17507412 17507412 + Missense_Mutation SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 SLC20A2 6575 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 8 42294728 42294728 + Silent SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 DPP7 29952 hgsc.bcm.edu 37 9 140008471 140008471 + Missense_Mutation SNP C C T rs138978681 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 OR2W1 26692 broad.mit.edu;hgsc.bcm.edu;bcgsc.ca 37 6 29012270 29012270 + Missense_Mutation SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ANO5 203859 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 11 22291963 22291963 + Silent SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ANTXR2 118429 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 4 80954628 80954628 + Missense_Mutation SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 GABRB2 2561 hgsc.bcm.edu 37 5 160886707 160886709 + In_Frame_Del DEL CTT CTT - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 KIF17 57576 broad.mit.edu;mdanderson.org 37 1 21014271 21014271 + Silent SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 GPR158 57512 broad.mit.edu;ucsc.edu;mdanderson.org 37 10 25887315 25887315 + Silent SNP C C G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ANO3 63982 broad.mit.edu;mdanderson.org 37 11 26465370 26465370 + Silent SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ORAOV1 220064 broad.mit.edu 37 11 69482297 69482297 + Missense_Mutation SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 TAS2R50 259296 broad.mit.edu;mdanderson.org;bcgsc.ca 37 12 11139408 11139408 + Missense_Mutation SNP C C A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 GPR19 2842 broad.mit.edu 37 12 12814274 12814274 + Frame_Shift_Del DEL T T - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MYF6 4618 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 12 81102660 81102660 + Missense_Mutation SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 LRFN5 145581 broad.mit.edu 37 14 42356435 42356435 + Missense_Mutation SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 FAM154B 283726 broad.mit.edu;mdanderson.org;bcgsc.ca 37 15 82564044 82564044 + Missense_Mutation SNP C C T rs150372195 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 UBE2MP1 606551 broad.mit.edu 37 16 34404145 34404145 + RNA SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 PELP1 27043 broad.mit.edu 37 17 4575433 4575433 + Silent SNP C C T rs201455361 alternate_allele TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 TTLL6 284076 broad.mit.edu 37 17 46847199 46847202 + Frame_Shift_Del DEL CATG CATG - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 CATG CATG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 GAA 2548 broad.mit.edu 37 17 78086495 78086495 + Missense_Mutation SNP G G T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 NLRP13 126204 broad.mit.edu 37 19 56424477 56424477 + Frame_Shift_Del DEL T T - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 GTF3C2 2976 broad.mit.edu;ucsc.edu 37 2 27550102 27550102 + Silent SNP T T C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ALK 238 broad.mit.edu;mdanderson.org;bcgsc.ca 37 2 29416536 29416536 + Missense_Mutation SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 IMMT 10989 broad.mit.edu 37 2 86374840 86374840 + Silent SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 SATB2 23314 broad.mit.edu 37 2 200136984 200136984 + Missense_Mutation SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 NCL 4691 broad.mit.edu 37 2 232322444 232322444 + Missense_Mutation SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MUC4 4585 broad.mit.edu 37 3 195509957 195509957 + Missense_Mutation SNP A A G rs201699932 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 G3BP2 9908 broad.mit.edu 37 4 76570758 76570758 + Frame_Shift_Del DEL A A - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 PDHA2 5161 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 96761794 96761794 + Missense_Mutation SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 RIMS1 22999 broad.mit.edu 37 6 73102466 73102466 + Silent SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 AVL9 23080 broad.mit.edu 37 7 32620439 32620439 + Frame_Shift_Del DEL A A - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 SPDYE1 285955 broad.mit.edu 37 7 44046997 44046997 + Frame_Shift_Del DEL A A - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 TMEM120A 83862 broad.mit.edu;ucsc.edu;mdanderson.org 37 7 75617798 75617798 + Silent SNP G G C rs114564646 by1000genomes;alternate_allele TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 UBR5 51366 broad.mit.edu 37 8 103289349 103289349 + Frame_Shift_Del DEL T T - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 RGAG1 57529 broad.mit.edu 37 X 109698465 109698465 + Silent SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 VANGL1 81839 broad.mit.edu 37 1 116226629 116226630 + Frame_Shift_Ins INS - - A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 PKLR 5313 broad.mit.edu 37 1 155270047 155270048 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MUC5B 727897 broad.mit.edu 37 11 1260210 1260211 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 HECTD4 283450 broad.mit.edu 37 12 112688161 112688162 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 POTEG 404785 broad.mit.edu 37 14 19553498 19553499 + Frame_Shift_Ins INS - - G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 YLPM1 56252 broad.mit.edu 37 14 75248591 75248592 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 PLA2G4D 283748 broad.mit.edu 37 15 42362217 42362218 + Frame_Shift_Ins INS - - G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 C15orf48 84419 broad.mit.edu 37 15 45723237 45723238 + Frame_Shift_Ins INS - - G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 EFTUD1P1 648809 broad.mit.edu 37 15 84790358 84790359 + RNA INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ZSCAN10 84891 broad.mit.edu 37 16 3140487 3140488 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 CCDC144A 9720 broad.mit.edu 37 17 16665752 16665753 + Frame_Shift_Ins INS - - A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 LAMA1 284217 broad.mit.edu 37 18 6949154 6949155 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ADAMTS10 81794 broad.mit.edu 37 19 8650351 8650352 + Frame_Shift_Ins INS - - T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MAP1S 55201 broad.mit.edu 37 19 17838792 17838793 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 FUZ 80199 broad.mit.edu 37 19 50312460 50312461 + Frame_Shift_Ins INS - - G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 POTEE 445582 broad.mit.edu 37 2 132021077 132021078 + Frame_Shift_Ins INS - - A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 SIGLEC1 6614 broad.mit.edu 37 20 3677991 3677992 + Splice_Site INS - - G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 POTEH 23784 broad.mit.edu 37 22 16266972 16266973 + Frame_Shift_Ins INS - - T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 RIMBP3 85376 broad.mit.edu 37 22 20458634 20458635 + Frame_Shift_Ins INS - - C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 DMRTA1 63951 broad.mit.edu 37 9 22451467 22451468 + Frame_Shift_Ins INS - - A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 KIF24 347240 broad.mit.edu 37 9 34257343 34257344 + Frame_Shift_Ins INS - - GGGG novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 COL5A1 1289 broad.mit.edu 37 9 137645718 137645719 + Frame_Shift_Ins INS - - G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 SATL1 340562 broad.mit.edu 37 X 84363631 84363632 + Frame_Shift_Ins INS - - T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 C1orf198 84886 ucsc.edu 37 1 231004156 231004156 + Missense_Mutation SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 HDGF 3068 ucsc.edu 37 1 156721154 156721154 + Missense_Mutation SNP T T G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 LPO 4025 ucsc.edu 37 17 56343529 56343529 + Missense_Mutation SNP T T C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 PCDP1 0 ucsc.edu 37 2 120397411 120397411 + Missense_Mutation SNP T T C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 SIGLEC11 114132 ucsc.edu 37 19 50455564 50455564 + Missense_Mutation SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ZYG11A 440590 ucsc.edu 37 1 53343631 53343631 + Missense_Mutation SNP T T C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ACTN4 81 mdanderson.org;bcgsc.ca 37 19 39217630 39217630 + Missense_Mutation SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ADAM22 53616 mdanderson.org 37 7 87564497 87564497 + Missense_Mutation SNP C C G rs2279542 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ARHGEF10L 55160 mdanderson.org 37 1 18023690 18023690 + Missense_Mutation SNP A A G rs2270976 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 BANP 54971 mdanderson.org 37 16 88105725 88105725 + Silent SNP G G A rs8050209 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 BCAR1 9564 mdanderson.org 37 16 75269477 75269477 + Silent SNP A A C rs61729595 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 CDC27 996 mdanderson.org 37 17 45234432 45234432 + Missense_Mutation SNP G G T rs201187810 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 CPZ 8532 mdanderson.org 37 4 8594574 8594574 + Missense_Mutation SNP T T C rs2302583 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 CPZ 8532 mdanderson.org 37 4 8594577 8594577 + Missense_Mutation SNP C C T rs34964084 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 EID2B 126272 mdanderson.org 37 19 40023308 40023308 + Silent SNP A A G rs1123301 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 FAM182A 284800 mdanderson.org 37 20 26061818 26061818 + RNA SNP G G C rs112101451 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 FRG1 2483 mdanderson.org 37 4 190873379 190873379 + Missense_Mutation SNP A A G rs1803592 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 GGT1 2678 mdanderson.org 37 22 25023459 25023459 + Missense_Mutation SNP G G C rs138813205 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 HLA-C 3107 mdanderson.org 37 6 31239006 31239006 + Missense_Mutation SNP G G T rs76907552 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 HOOK2 29911 mdanderson.org 37 19 12876964 12876964 + Missense_Mutation SNP G G C rs897804 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 IGSF3 3321 mdanderson.org 37 1 117158772 117158772 + Silent SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 KIAA0319 9856 mdanderson.org 37 6 24551664 24551664 + Missense_Mutation SNP T T C rs807534 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 KIF18A 81930 mdanderson.org 37 11 28119446 28119446 + Missense_Mutation SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 KRT5 3852 mdanderson.org 37 12 52912805 52912805 + Missense_Mutation SNP C C T rs3194286 by2hit2allele TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 KRTAP9-2 83899 mdanderson.org 37 17 39383027 39383027 + Missense_Mutation SNP G G T rs71371478 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MIR515-1 574462 mdanderson.org 37 19 54188309 54188309 + RNA SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MUC4 4585 mdanderson.org 37 3 195506425 195506425 + Missense_Mutation SNP A A G rs201051713 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MUC4 4585 mdanderson.org 37 3 195506450 195506450 + Missense_Mutation SNP G G C rs201981197 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MUC6 4588 mdanderson.org 37 11 1016885 1016885 + Silent SNP A A C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 MUC6 4588 mdanderson.org 37 11 1018341 1018341 + Missense_Mutation SNP G G A rs79748612 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 NBPF14 25832 mdanderson.org 37 1 148004733 148004733 + Missense_Mutation SNP T T C rs78149412 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 NEUROG2 63973 mdanderson.org 37 4 113436044 113436044 + Silent SNP T T G rs901474 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 OR2J3 442186 mdanderson.org 37 6 29080088 29080088 + Missense_Mutation SNP C C T novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 PABPC1 26986 mdanderson.org 37 8 101727714 101727714 + Missense_Mutation SNP G G A rs200538577 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 PSPC1 55269 mdanderson.org 37 13 20279923 20279923 + Missense_Mutation SNP A A G rs555759 bycluster TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 RBMXL1 494115 mdanderson.org 37 1 89449141 89449141 + Silent SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 RNF145 153830 mdanderson.org 37 5 158630641 158630641 + Silent SNP C C T rs74841177 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 TNFRSF10B 8795 mdanderson.org 37 8 22926313 22926313 + Missense_Mutation SNP G G A rs1129424 byfrequency TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 TRPC6 7225 mdanderson.org 37 11 101454192 101454192 + Missense_Mutation SNP G G A rs3802829 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 UBR3 130507 mdanderson.org 37 2 170684548 170684548 + Silent SNP G G A rs79036304 byfrequency;by1000genomes TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 UEVLD 55293 mdanderson.org 37 11 18579859 18579859 + Missense_Mutation SNP C C A rs199752573 TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 UNC93A 54346 mdanderson.org 37 6 167728900 167728900 + Missense_Mutation SNP T T C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 VCX3B 425054 mdanderson.org 37 X 8434221 8434221 + Missense_Mutation SNP G G C novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ZNF552 79818 mdanderson.org 37 19 58320162 58320162 + Missense_Mutation SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 C11orf83 790955 bcgsc.ca 37 11 62439458 62439458 + Missense_Mutation SNP G G A novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 TEX14 56155 bcgsc.ca 37 17 56649410 56649410 + Missense_Mutation SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 SMARCC1 6599 bcgsc.ca 37 3 47651783 47651783 + Missense_Mutation SNP C C G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 GABRB2 2561 bcgsc.ca 37 5 160886708 160886710 + In_Frame_Del DEL CTT CTT - novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 SLC13A1 6561 bcgsc.ca 37 7 122759248 122759248 + Missense_Mutation SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 ZC3H3 23144 bcgsc.ca 37 8 144522319 144522319 + Missense_Mutation SNP A A G novel TCGA-KO-8409-01A-11D-2310-10 TCGA-KO-8409-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989 8df1eeb4-dfc9-4a0a-8f93-98460c3ab489 ab217c1c-6141-4391-85a8-cacd3c7b1989