Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID FEZ1 9638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 11 125359542 125359542 + Silent SNP G G A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd OR2AT4 341152 hgsc.bcm.edu 37 11 74800084 74800084 + Silent SNP G G A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd TP53 7157 hgsc.bcm.edu;bcgsc.ca 37 17 7577543 7577543 + Missense_Mutation SNP C C A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd OR10H2 26538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 19 15839690 15839690 + Silent SNP C C T rs141193809 by1000genomes TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd SYNDIG1 79953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 20 24646034 24646034 + Missense_Mutation SNP G G A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd GPR35 2859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 241570087 241570087 + Missense_Mutation SNP C C T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd HRH1 3269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 3 11301062 11301062 + Silent SNP G G A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd FBXL5 26234 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 15640143 15640143 + Missense_Mutation SNP T T C novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd GGCT 79017 hgsc.bcm.edu 37 7 30544237 30544238 + Frame_Shift_Del DEL CT CT - novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd LPIN1 23175 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 2 11907890 11907890 + Missense_Mutation SNP T T A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd CSMD2 114784 broad.mit.edu;mdanderson.org;bcgsc.ca 37 1 34037290 34037290 + Missense_Mutation SNP T T C novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd LHX8 431707 broad.mit.edu 37 1 75622672 75622672 + Missense_Mutation SNP T T C novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd KIFAP3 22920 broad.mit.edu 37 1 170004687 170004687 + Silent SNP G G A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ADAMTS14 140766 broad.mit.edu 37 10 72496471 72496471 + Silent SNP C C T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd MUC2 4583 broad.mit.edu 37 11 1092624 1092624 + Silent SNP C C A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd GYLTL1B 120071 broad.mit.edu 37 11 45945039 45945039 + Missense_Mutation SNP A A G rs200481274 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd RCOR2 283248 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 63681937 63681937 + Missense_Mutation SNP A A G novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd CEP57 9702 broad.mit.edu 37 11 95561021 95561021 + Silent SNP A A G novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd SETD1A 9739 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30990508 30990508 + Missense_Mutation SNP C C G novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd MYO15A 51168 broad.mit.edu 37 17 18025035 18025035 + Missense_Mutation SNP C C T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd PEG3 5178 broad.mit.edu;mdanderson.org;bcgsc.ca 37 19 57327003 57327003 + Missense_Mutation SNP C C T rs140722468 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd CELSR3 1951 broad.mit.edu 37 3 48697290 48697290 + Silent SNP G G T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd GPX1 2876 broad.mit.edu 37 3 49395482 49395482 + Missense_Mutation SNP G G C rs75404373 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ZBBX 79740 broad.mit.edu 37 3 167039952 167039952 + Silent SNP T T C novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd MUC4 4585 broad.mit.edu 37 3 195513481 195513481 + Missense_Mutation SNP G G A rs77462830 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd EVC2 132884 broad.mit.edu 37 4 5564754 5564754 + Missense_Mutation SNP C C T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd CDC25C 995 broad.mit.edu 37 5 137666827 137666827 + Missense_Mutation SNP A A G novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd DST 667 broad.mit.edu;bcgsc.ca 37 6 56417323 56417323 + Nonsense_Mutation SNP C C A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd BAZ1B 9031 broad.mit.edu 37 7 72863961 72863961 + Silent SNP A A G novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd GRM3 2913 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 86479693 86479693 + Missense_Mutation SNP C C T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd PTPRN2 5799 broad.mit.edu;bcgsc.ca 37 7 157449123 157449123 + Missense_Mutation SNP G G A novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd TRAPPC9 83696 broad.mit.edu 37 8 141321473 141321473 + Missense_Mutation SNP T T C novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd CR1 1378 ucsc.edu;bcgsc.ca 37 1 207787753 207787753 + Nonsense_Mutation SNP C C T rs55749440 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd PAPLN 89932 ucsc.edu 37 14 73721711 73721711 + Missense_Mutation SNP T T C novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ULK4 54986 ucsc.edu 37 3 41860994 41860994 + Missense_Mutation SNP T T C novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ADRA2B 151 mdanderson.org 37 2 96780986 96780986 + Silent SNP C C T rs4426564 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd AHNAK2 113146 mdanderson.org 37 14 105412138 105412138 + Missense_Mutation SNP A A G rs200384326 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ANKRD20A5P 440482 mdanderson.org 37 18 14183979 14183979 + RNA SNP G G A rs74732432 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ARHGAP5 394 mdanderson.org;bcgsc.ca 37 14 32561340 32561340 + Missense_Mutation SNP G G A rs78337553 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ATP8B3 148229 mdanderson.org 37 19 1789556 1789556 + Silent SNP C C T rs12978609 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd C15orf37 283687 mdanderson.org 37 15 80215597 80215597 + RNA SNP G G T rs2303824 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd CDC27 996 mdanderson.org 37 17 45234664 45234664 + Missense_Mutation SNP C C T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd CR1 1378 mdanderson.org 37 1 207787796 207787796 + Missense_Mutation SNP T T C rs61822976 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd DENND4B 9909 mdanderson.org 37 1 153907297 153907297 + Silent SNP C C T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd DENND4B 9909 mdanderson.org 37 1 153907306 153907306 + Silent SNP T T C rs12567786 bycluster;byfrequency;byhapmap;by1000genomes TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd FAM21C 253725 mdanderson.org 37 10 46265032 46265032 + Missense_Mutation SNP A A G rs2805206 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd FCGR3B 2215 mdanderson.org 37 1 161599643 161599643 + Missense_Mutation SNP T T C rs428888 bycluster;byfrequency;by2hit2allele TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd GXYLT1 283464 mdanderson.org 37 12 42512817 42512817 + Silent SNP A A G rs201566551 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd IGSF3 3321 mdanderson.org 37 1 117158745 117158745 + Missense_Mutation SNP A A C novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd KNDC1 85442 mdanderson.org 37 10 135000148 135000148 + Silent SNP T T C rs3810965 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd KNDC1 85442 mdanderson.org 37 10 135000159 135000159 + Missense_Mutation SNP A A G rs3810964 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd MUC4 4585 mdanderson.org 37 3 195509339 195509339 + Missense_Mutation SNP C C T novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd MUC6 4588 mdanderson.org 37 11 1016628 1016628 + Missense_Mutation SNP G G A rs202039948 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd MUC6 4588 mdanderson.org 37 11 1016662 1016662 + Missense_Mutation SNP G G A rs201489806 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd NCOA3 8202 mdanderson.org 37 20 46279827 46279827 + Silent SNP G G A rs6018623 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd OBSL1 23363 mdanderson.org 37 2 220417266 220417266 + Missense_Mutation SNP C C T rs59332477 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd PRH2 5555 mdanderson.org 37 12 11083356 11083356 + Missense_Mutation SNP A A G rs116998526 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd PRSS3 5646 mdanderson.org 37 9 33794809 33794809 + Missense_Mutation SNP G G A rs201061108 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd PRSS3 5646 mdanderson.org 37 9 33794812 33794812 + Missense_Mutation SNP G G T rs199873220 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd RCOR2 283248 mdanderson.org 37 11 63679369 63679369 + Missense_Mutation SNP T T C rs320108 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd TMPRSS13 84000 mdanderson.org 37 11 117789327 117789327 + Missense_Mutation SNP T T C rs61900346 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd TREML2 79865 mdanderson.org 37 6 41166017 41166017 + Missense_Mutation SNP C C T rs77093113 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd TREML2 79865 mdanderson.org 37 6 41166021 41166021 + Missense_Mutation SNP C C T rs61736679 byfrequency TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd WDR87 83889 mdanderson.org 37 19 38377404 38377404 + Missense_Mutation SNP C C T rs201328117 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ZNF814 730051 mdanderson.org 37 19 58385748 58385748 + Missense_Mutation SNP G G A rs145250945 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ZNF814 730051 mdanderson.org 37 19 58385762 58385762 + Silent SNP C C G rs199732634 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ZNF814 730051 mdanderson.org 37 19 58385790 58385790 + Missense_Mutation SNP G G T rs111727691 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ZNF814 730051 mdanderson.org 37 19 58385793 58385793 + Missense_Mutation SNP C C T rs113623532 TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd ZNF814 730051 mdanderson.org 37 19 58385798 58385799 + Missense_Mutation DNP CC CC TT novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 CC CC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd PTPRF 5792 bcgsc.ca 37 1 44079334 44079334 + Missense_Mutation SNP A A G novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd PDGFD 80310 bcgsc.ca 37 11 104034625 104034625 + Frame_Shift_Del DEL A A - novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd SYNE2 23224 bcgsc.ca 37 14 64445578 64445578 + Missense_Mutation SNP A A G novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd GGCT 79017 bcgsc.ca 37 7 30544238 30544239 + Frame_Shift_Del DEL CT CT - novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd GNAI1 2770 bcgsc.ca 37 7 79818278 79818284 + Frame_Shift_Del DEL ATCTGGT ATCTGGT - novel TCGA-KO-8414-01A-11D-2310-10 TCGA-KO-8414-11A-01D-2311-10 ATCTGGT ATCTGGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd 2a61c3d7-f0c1-45d1-9eca-02fb72e95c13 edf00a92-13fd-4c2f-b41c-16458d1a47dd