Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID KAT6B 23522 hgsc.bcm.edu 37 10 76790413 76790413 + Missense_Mutation SNP A A G rs143966521 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 OR51I2 390064 hgsc.bcm.edu 37 11 5475431 5475431 + Missense_Mutation SNP T T A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 DAAM1 23002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 14 59793702 59793702 + Missense_Mutation SNP G G T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;bcgsc.ca 37 14 75265325 75265325 + Nonsense_Mutation SNP C C T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 LIPC 3990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 58837951 58837951 + Silent SNP C C T rs149322349 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CYP1A2 1544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 15 75042327 75042327 + Missense_Mutation SNP C C T rs138652540 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 P4HB 5034 hgsc.bcm.edu 37 17 79801890 79801891 + Frame_Shift_Del DEL AC AC - novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CEP89 84902 hgsc.bcm.edu 37 19 33444556 33444556 + Missense_Mutation SNP T T C rs73579706 bycluster;byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 19 8994179 8994179 + Missense_Mutation SNP C C T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PPDPF 79144 hgsc.bcm.edu 37 20 62152686 62152687 + Frame_Shift_Ins INS - - CC novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PCDH12 51294 hgsc.bcm.edu 37 5 141324954 141324954 + Missense_Mutation SNP A A T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ADAMTS2 9509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 178580530 178580530 + Missense_Mutation SNP G G A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PPP1R9A 55607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 94827677 94827677 + Missense_Mutation SNP G G A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PPP6C 5537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 9 127915854 127915854 + Silent SNP G G A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ZBTB43 23099 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 9 129595572 129595572 + Missense_Mutation SNP G G A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 RPS6KA6 27330 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 X 83361951 83361951 + Silent SNP A A G novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 TDRD1 56165 hgsc.bcm.edu 37 10 115987678 115987678 + Missense_Mutation SNP A A G rs34112549 bycluster;byfrequency;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CACYBP 27101 hgsc.bcm.edu 37 1 174975972 174975972 + Silent SNP A A G rs1802325 bycluster;byfrequency;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ZNF469 84627 broad.mit.edu;hgsc.bcm.edu;bcgsc.ca 37 16 88497528 88497528 + Missense_Mutation SNP C C T rs115183769 byfrequency;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 TTN 7273 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 179613962 179613962 + Missense_Mutation SNP C C T rs72648903 bycluster;byfrequency;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 COL4A4 1286 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 227924228 227924228 + Missense_Mutation SNP G G A rs36121515 bycluster;byfrequency;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 UGT1A9 54600 broad.mit.edu;hgsc.bcm.edu 37 2 234581245 234581245 + Missense_Mutation SNP G G A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PHF21B 112885 hgsc.bcm.edu 37 22 45283998 45283998 + Missense_Mutation SNP C C G novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 IMPDH2 3615 hgsc.bcm.edu 37 3 49065314 49065314 + Silent SNP G G A rs139765703 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CAPN11 11131 hgsc.bcm.edu;bcgsc.ca 37 6 44137081 44137081 + Missense_Mutation SNP G G T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 COL22A1 169044 hgsc.bcm.edu;ucsc.edu 37 8 139606435 139606435 + Silent SNP G G A rs115499018 bycluster;byfrequency;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 DEFA6 1671 hgsc.bcm.edu 37 8 6783459 6783459 + Silent SNP A A C rs13439322 bycluster;byfrequency;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 C8orf47 203111 hgsc.bcm.edu 37 8 99102105 99102105 + Missense_Mutation SNP A A G rs11994440 bycluster;byfrequency;byhapmap;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 AJAP1 55966 broad.mit.edu;mdanderson.org;bcgsc.ca 37 1 4772576 4772576 + Missense_Mutation SNP G G C novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 GJB5 2709 broad.mit.edu 37 1 35223027 35223027 + Silent SNP C C T rs61750010 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 FHL3 2275 broad.mit.edu 37 1 38463083 38463083 + Silent SNP C C A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PROX1 5629 broad.mit.edu;ucsc.edu;mdanderson.org 37 1 214171103 214171103 + Silent SNP C C T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 NUTF2 10204 broad.mit.edu 37 16 67899046 67899046 + Missense_Mutation SNP C C A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ELAC2 60528 broad.mit.edu 37 17 12898343 12898343 + Silent SNP C C T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PSMD12 5718 broad.mit.edu 37 17 65340732 65340732 + Missense_Mutation SNP A A G rs2230680 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ZNF180 7733 broad.mit.edu 37 19 44982053 44982053 + Missense_Mutation SNP G G T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 STK25 10494 broad.mit.edu;bcgsc.ca 37 2 242437048 242437048 + Missense_Mutation SNP G G A rs140408761 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 BBS12 166379 broad.mit.edu;mdanderson.org 37 4 123663688 123663688 + Missense_Mutation SNP G G A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 HCN1 348980 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 45396746 45396746 + Missense_Mutation SNP C C G novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 SOX30 11063 broad.mit.edu 37 5 157078493 157078493 + Silent SNP G G A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CLDN23 137075 broad.mit.edu 37 8 8560021 8560021 + Missense_Mutation SNP A A C rs202151198 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ZNF658 26149 broad.mit.edu;mdanderson.org;bcgsc.ca 37 9 40774999 40774999 + Missense_Mutation SNP T T A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CXorf22 170063 broad.mit.edu;mdanderson.org;bcgsc.ca 37 X 35969403 35969403 + Missense_Mutation SNP G G A novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PDZD11 51248 broad.mit.edu;mdanderson.org;bcgsc.ca 37 X 69506937 69506937 + Missense_Mutation SNP G G T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ANKMY2 57037 ucsc.edu 37 7 16642116 16642116 + Missense_Mutation SNP T T G novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ANKRD45 339416 ucsc.edu 37 1 173596257 173596257 + Missense_Mutation SNP A A T rs12059066 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ANP32E 81611 ucsc.edu;mdanderson.org 37 1 150199042 150199042 + Missense_Mutation SNP C C A rs28594165 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ANP32E 81611 ucsc.edu;mdanderson.org 37 1 150199045 150199045 + Silent SNP T T C rs28460085 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 DENND3 22898 ucsc.edu 37 8 142204326 142204326 + Silent SNP C C G rs1045248 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 HCRTR1 3061 ucsc.edu;bcgsc.ca 37 1 32084861 32084861 + Missense_Mutation SNP T T C rs11806980 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 IRS2 8660 ucsc.edu 37 13 110435914 110435914 + Silent SNP G G A rs12853546 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 LBX2 85474 ucsc.edu;bcgsc.ca 37 2 74725178 74725178 + Missense_Mutation SNP G G A rs17009998 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 NOC2L 26155 ucsc.edu 37 1 880468 880468 + Silent SNP C C T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 NOC2L 26155 ucsc.edu 37 1 880475 880475 + Missense_Mutation SNP T T C novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PHF21A 51317 ucsc.edu 37 11 46001380 46001380 + Silent SNP T T C rs151038480 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PIEZO1 9780 ucsc.edu 37 16 88800398 88800398 + Missense_Mutation SNP G G C rs62639697 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ARHGAP5 394 mdanderson.org 37 14 32561316 32561316 + Nonsense_Mutation SNP G G T rs200628183 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 BAIAP2L2 80115 mdanderson.org 37 22 38483172 38483172 + Silent SNP G G T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 BAIAP2L2 80115 mdanderson.org 37 22 38483174 38483174 + Missense_Mutation SNP A A T rs78489217 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 BAIAP2L2 80115 mdanderson.org 37 22 38483180 38483180 + Missense_Mutation SNP A A G rs111783779 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 BDNF-AS 497258 mdanderson.org 37 11 27681197 27681197 + RNA SNP C C T rs77220398 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CARD17 440068 mdanderson.org;bcgsc.ca 37 11 104971257 104971257 + Missense_Mutation SNP G G A rs12806837 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CCNY 219771 mdanderson.org 37 10 35772402 35772402 + Silent SNP G G A rs3802509 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CDC42EP1 11135 mdanderson.org 37 22 37964429 37964429 + Missense_Mutation SNP T T C rs62235034 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CDHR2 54825 mdanderson.org 37 5 175992370 175992370 + Missense_Mutation SNP T T C rs114786529 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CEP170 9859 mdanderson.org 37 1 243333027 243333027 + Silent SNP A A G rs34466343 bycluster TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CLCA4 22802 mdanderson.org 37 1 87045902 87045902 + Silent SNP A A T rs1932809 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CROCC 9696 mdanderson.org 37 1 17272044 17272044 + Silent SNP A A G rs2761550 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 DCAF4 26094 mdanderson.org 37 14 73422350 73422350 + Silent SNP T T G rs2806034 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 DISP2 85455 mdanderson.org 37 15 40660192 40660192 + Silent SNP C C T rs8040755 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ERG 2078 mdanderson.org 37 21 39795360 39795360 + Silent SNP C C T rs200326224 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 GRIN3B 116444 mdanderson.org 37 19 1009585 1009585 + Missense_Mutation SNP C C G rs10401454 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 HLA-C 3107 mdanderson.org 37 6 31238859 31238859 + Missense_Mutation SNP G G C rs41555616 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 HLA-DRB1 3123 mdanderson.org 37 6 32548534 32548534 + Missense_Mutation SNP C C T rs71547382 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 MAP1LC3B 81631 mdanderson.org 37 16 87436663 87436663 + Missense_Mutation SNP A A G rs200708875 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 MAVS 57506 mdanderson.org;bcgsc.ca 37 20 3838400 3838400 + Missense_Mutation SNP G G T rs11905552 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 MIR1908 100302263 mdanderson.org 37 11 61582708 61582708 + RNA SNP T T C rs174561 byfrequency;by1000genomes TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 MUC4 4585 mdanderson.org 37 3 195511836 195511836 + Missense_Mutation SNP C C G rs75072939 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 MUC4 4585 mdanderson.org 37 3 195511925 195511925 + Missense_Mutation SNP A A G rs78031084 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 NUMBL 9253 mdanderson.org 37 19 41173898 41173898 + Silent SNP T T C rs79747129 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PCDHA6 56142 mdanderson.org 37 5 140207965 140207965 + Missense_Mutation SNP G G C rs61730626 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PCMTD1 115294 mdanderson.org 37 8 52733209 52733209 + Missense_Mutation SNP A A G rs202074278 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PCMTD1 115294 mdanderson.org 37 8 52733214 52733214 + Missense_Mutation SNP A A C rs200377849 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 POLN 353497 mdanderson.org 37 4 2175733 2175733 + Silent SNP A A G rs2022302 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 POTEC 388468 mdanderson.org 37 18 14542884 14542884 + Missense_Mutation SNP T T C rs2458862 bycluster;by2hit2allele TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PRB1 5542 mdanderson.org 37 12 11508460 11508460 + Silent SNP A A G rs78738636 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PRB2 653247 mdanderson.org 37 12 11546625 11546625 + Silent SNP A A G rs200564286 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PSG4 5672 mdanderson.org 37 19 43709647 43709647 + Silent SNP G G A rs12985206 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 RBBP6 5930 mdanderson.org 37 16 24583715 24583715 + Silent SNP A A G novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 RBMX 27316 mdanderson.org 37 X 135956462 135956462 + Missense_Mutation SNP G G C rs74667874 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 RBMX 27316 mdanderson.org 37 X 135956467 135956467 + Missense_Mutation SNP C C T rs75385615 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 SLC5A10 125206 mdanderson.org 37 17 18918396 18918396 + Silent SNP G G C rs2074279 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 SLIT2 9353 mdanderson.org 37 4 20535317 20535317 + Missense_Mutation SNP G G C novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 SPAG7 9552 mdanderson.org 37 17 4864114 4864114 + Silent SNP T T C rs61749470 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 TRIM63 84676 mdanderson.org;bcgsc.ca 37 1 26385003 26385003 + Missense_Mutation SNP T T C rs2275950 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 URI1 8725 mdanderson.org 37 19 30500143 30500143 + Silent SNP T T C rs1127493 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 S100A7A 338324 bcgsc.ca 37 1 153391729 153391729 + Missense_Mutation SNP G G A rs56232841 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 RHBG 57127 bcgsc.ca 37 1 156351699 156351699 + Missense_Mutation SNP G G A rs3748569 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 DNHD1 144132 bcgsc.ca 37 11 6524072 6524072 + Missense_Mutation SNP A A C rs11605196 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ERH 2079 bcgsc.ca 37 14 69861593 69861593 + Missense_Mutation SNP G G T novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 XAF1 54739 bcgsc.ca 37 17 6663894 6663894 + Missense_Mutation SNP G G A rs2271232 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 MYH4 4622 bcgsc.ca 37 17 10348354 10348354 + Missense_Mutation SNP T T C rs2277649 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 LRRC48 83450 bcgsc.ca 37 17 17896205 17896205 + Missense_Mutation SNP C C T rs4584886 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 EVPL 2125 bcgsc.ca 37 17 74006474 74006474 + Nonsense_Mutation SNP G G A rs151046085 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 P4HB 5034 bcgsc.ca 37 17 79801891 79801892 + Frame_Shift_Del DEL AC AC - novel TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ZNF577 84765 bcgsc.ca 37 19 52375849 52375849 + Missense_Mutation SNP T T A rs144158167 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 ATL2 64225 bcgsc.ca 37 2 38525660 38525660 + Missense_Mutation SNP C C G rs7582826 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CLEC4F 165530 bcgsc.ca 37 2 71043461 71043461 + Missense_Mutation SNP C C T rs722896 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 GPD2 2820 bcgsc.ca 37 2 157406249 157406249 + Missense_Mutation SNP G G A rs2116665 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 PPIG 9360 bcgsc.ca 37 2 170493677 170493677 + Missense_Mutation SNP C C G rs78054206 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 C2orf88 84281 bcgsc.ca 37 2 191064753 191064753 + Missense_Mutation SNP C C T rs6753459 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 MAVS 57506 bcgsc.ca 37 20 3838399 3838399 + Missense_Mutation SNP T T A rs34591263 alternate_allele TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 SRMS 6725 bcgsc.ca 37 20 62173561 62173561 + Missense_Mutation SNP C C G rs310657 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 KRTAP12-2 353323 bcgsc.ca 37 21 46086377 46086377 + Missense_Mutation SNP A A G rs2838622 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 LPP 4026 bcgsc.ca 37 3 188327555 188327555 + Missense_Mutation SNP T T C rs7645635 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 CATSPER3 347732 bcgsc.ca 37 5 134343766 134343766 + Missense_Mutation SNP T T G rs3896260 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 EBF2 64641 bcgsc.ca 37 8 25708131 25708131 + Missense_Mutation SNP C C T rs17054477 byfrequency TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 SLC52A2 79581 bcgsc.ca 37 8 145583036 145583036 + Missense_Mutation SNP A A G rs141698844 TCGA-KO-8417-01A-11D-2310-10 TCGA-KO-8417-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4 0c7af04b-e171-47c4-8be5-5db33f20148e 32e33f58-0399-49bb-bc8c-1eeb122d4df4