Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID MICALCL 84953 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 11 12316009 12316009 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e HSPG2 3339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 22176895 22176895 + Missense_Mutation SNP A A T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e HDAC7 51564 broad.mit.edu;hgsc.bcm.edu 37 12 48189416 48189416 + Frame_Shift_Del DEL G G - novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e TENC1 23371 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 53449591 53449591 + Missense_Mutation SNP C C G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e RBBP6 5930 broad.mit.edu;hgsc.bcm.edu 37 16 24582960 24582960 + Frame_Shift_Del DEL G G - novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e ADCY7 113 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 16 50348998 50348998 + Silent SNP T T A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e PLCB1 23236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 20 8770880 8770880 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FAM168B 130074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 2 131813240 131813240 + Silent SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e BPIFC 254240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 22 32831775 32831775 + Silent SNP A A T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FAM82A1 151393 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 38224599 38224599 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e UROC1 131669 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 3 126220079 126220079 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e GOLGA4 2803 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 3 37360554 37360554 + Nonsense_Mutation SNP A A T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e LARP7 51574 hgsc.bcm.edu 37 4 113565882 113565883 + Frame_Shift_Ins INS - - A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e PNMA5 114824 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 152159197 152159197 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e PTGFRN 5738 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 1 117491967 117491967 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e DOCK7 85440 hgsc.bcm.edu;bcgsc.ca 37 1 63005305 63005305 + Missense_Mutation SNP T T A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e SDHA 6389 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 5 256467 256467 + Missense_Mutation SNP C C G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e AGRN 375790 broad.mit.edu 37 1 983491 983493 + In_Frame_Del DEL TGA TGA - novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 TGA TGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e CROCC 9696 broad.mit.edu 37 1 17280821 17280821 + Missense_Mutation SNP G G C rs6669627 byfrequency TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e GJB3 2707 broad.mit.edu 37 1 35250386 35250386 + Missense_Mutation SNP C C A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e BCAN 63827 broad.mit.edu 37 1 156622489 156622489 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e OR5M3 219482 broad.mit.edu 37 11 56237919 56237919 + Nonsense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FAT3 120114 broad.mit.edu 37 11 92531376 92531376 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e LPAR5 57121 broad.mit.edu 37 12 6729661 6729663 + In_Frame_Del DEL TGT TGT - novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 TGT TGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e TUBA3C 7278 broad.mit.edu 37 13 19751676 19751676 + Silent SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e EBPL 84650 broad.mit.edu 37 13 50235138 50235138 + Missense_Mutation SNP T T G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e EBPL 84650 broad.mit.edu 37 13 50235160 50235160 + Missense_Mutation SNP G G C novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e TSR1 55720 broad.mit.edu 37 17 2228035 2228035 + Silent SNP A A G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e PLA2R1 22925 broad.mit.edu 37 2 160807853 160807853 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e PECR 55825 broad.mit.edu;bcgsc.ca 37 2 216946400 216946400 + Missense_Mutation SNP A A C novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e CAV3 859 broad.mit.edu 37 3 8775578 8775578 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FGA 2243 broad.mit.edu;mdanderson.org;bcgsc.ca 37 4 155506759 155506759 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e PCDHGA8 9708 broad.mit.edu 37 5 140774176 140774176 + Missense_Mutation SNP G G T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e VARS2 57176 broad.mit.edu 37 6 30889464 30889464 + Missense_Mutation SNP G G C novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e DLX6 1750 broad.mit.edu 37 7 96635389 96635391 + In_Frame_Del DEL CAG CAG - rs5885995 alternate_allele TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 CAG CAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e RPGR 6103 broad.mit.edu 37 X 38145423 38145423 + Frame_Shift_Del DEL A A - novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e MAGEC1 9947 broad.mit.edu 37 X 140994357 140994357 + Missense_Mutation SNP C C A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e AAK1 22848 ucsc.edu 37 2 69732801 69732801 + Silent SNP T T C novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e CEND1 51286 ucsc.edu 37 11 788570 788570 + Missense_Mutation SNP A A G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e COL20A1 57642 ucsc.edu 37 20 61950862 61950862 + Missense_Mutation SNP T T C novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e DCAF4 26094 ucsc.edu 37 14 73425508 73425508 + Missense_Mutation SNP A A G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FAM20A 54757 ucsc.edu 37 17 66538262 66538262 + Missense_Mutation SNP T T C novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FAM73A 374986 ucsc.edu 37 1 78269049 78269049 + Silent SNP A A G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e PTPDC1 138639 ucsc.edu 37 9 96857597 96857597 + Splice_Site SNP A A G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e RPIA 22934 ucsc.edu 37 2 88991370 88991370 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e SLC1A2 6506 ucsc.edu 37 11 35338967 35338967 + Silent SNP A A G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e SPOCD1 90853 ucsc.edu;bcgsc.ca 37 1 32280705 32280705 + Missense_Mutation SNP T T C novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e TMEM104 54868 ucsc.edu 37 17 72787131 72787131 + Missense_Mutation SNP A A G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e TMEM201 199953 ucsc.edu 37 1 9661448 9661448 + Missense_Mutation SNP A A G novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e ZNF469 84627 ucsc.edu;bcgsc.ca 37 16 88497524 88497524 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e ADAM29 11086 mdanderson.org 37 4 175899001 175899001 + Silent SNP T T C rs111240604 byfrequency TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e CDC27 996 mdanderson.org 37 17 45234397 45234397 + Missense_Mutation SNP G G A rs7350908 bycluster TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e DHRS4L2 317749 mdanderson.org 37 14 24464310 24464310 + Missense_Mutation SNP C C A rs61999853 byfrequency TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FOLH1 2346 mdanderson.org 37 11 49204732 49204732 + Missense_Mutation SNP T T C rs199782232 TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FRG1B 284802 mdanderson.org 37 20 29631562 29631562 + RNA SNP A A G rs75398190 TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e GOLGA8I 283796 mdanderson.org 37 15 23261950 23261950 + RNA SNP A A G rs11857654 byfrequency TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e HGC6.3 0 mdanderson.org 37 6 168377178 168377178 + Missense_Mutation SNP T T G rs71545159 alternate_allele TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e HGC6.3 0 mdanderson.org 37 6 168377262 168377262 + Missense_Mutation SNP T T G rs200098500 TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e HLA-DRB1 3123 mdanderson.org 37 6 32551996 32551996 + Missense_Mutation SNP G G T rs1059584 byfrequency TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e MLL3 58508 mdanderson.org 37 7 151932923 151932923 + Silent SNP G G A rs2740237 bycluster;by2hit2allele;byhapmap TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e MUC21 394263 mdanderson.org 37 6 30954932 30954932 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e MUC2 4583 mdanderson.org 37 11 1092973 1092973 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e OR11H12 440153 mdanderson.org 37 14 19378135 19378135 + Missense_Mutation SNP T T A rs71233802 TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e PLIN4 729359 mdanderson.org 37 19 4511494 4511494 + Silent SNP G G A rs201001883 TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e TUBA3C 7278 mdanderson.org 37 13 19751274 19751274 + Silent SNP G G A rs143115179 byfrequency TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e FAS 355 bcgsc.ca 37 10 90774008 90774008 + Missense_Mutation SNP C C T rs121913081 TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e HDAC7 51564 bcgsc.ca 37 12 48189417 48189417 + Frame_Shift_Del DEL G G - novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e RBBP6 5930 bcgsc.ca 37 16 24582961 24582961 + Frame_Shift_Del DEL G G - novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e TCEB3C 162699 bcgsc.ca 37 18 44555274 44555274 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e BRWD1 54014 bcgsc.ca 37 21 40649185 40649185 + Missense_Mutation SNP T T C novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e SLC6A19 340024 bcgsc.ca 37 5 1208864 1208864 + Missense_Mutation SNP C C T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e ATP6 0 bcgsc.ca 37 MT 9002 9002 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e ND5 0 bcgsc.ca 37 MT 13477 13477 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e CYTB 0 bcgsc.ca 37 MT 15812 15812 + Missense_Mutation SNP G G A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e SLC9A1 6548 bcgsc.ca 37 1 27436145 27436146 + Frame_Shift_Ins INS - - A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e LARP7 51574 bcgsc.ca 37 4 113565883 113565884 + Frame_Shift_Ins INS - - A novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e KIAA0408 9729 bcgsc.ca 37 6 127771252 127771253 + Frame_Shift_Ins INS - - T novel TCGA-KL-8332-01A-11D-2310-10 TCGA-KL-8332-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e c6d6f49e-6e95-4e41-8388-71f6fe017d80 1f3af48c-ba6b-4db5-ba11-75b7f50fae1e