Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID AKR1C4 1109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 10 5254675 5254675 + Nonsense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZNF365 22891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 10 64136341 64136341 + Missense_Mutation SNP C C A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 OR9I1 219954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 11 57886020 57886020 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 INTS5 80789 hgsc.bcm.edu;ucsc.edu 37 11 62417411 62417411 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 KDM2A 22992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 67022407 67022407 + Missense_Mutation SNP A A T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 DNM3 26052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 171890935 171890935 + Missense_Mutation SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PLEKHB1 58473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 73360070 73360070 + Missense_Mutation SNP C C A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PDE3A 5139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 12 20522512 20522512 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 GABRB3 2562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 15 26825479 26825479 + Silent SNP A A T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 HCN4 10021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 15 73617514 73617514 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 RBFOX1 54715 hgsc.bcm.edu;ucsc.edu 37 16 7383011 7383011 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 SLC13A5 284111 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 17 6606363 6606363 + Nonsense_Mutation SNP G G T rs148755614 byfrequency;alternate_allele TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 TP53 7157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 7577018 7577018 + Splice_Site SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 19 31770165 31770165 + Missense_Mutation SNP C C A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 NPHS1 4868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 19 36342723 36342723 + Missense_Mutation SNP G G A rs150180768 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZNF260 339324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 19 37006030 37006030 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 CYP2F1 1572 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 19 41628786 41628786 + Missense_Mutation SNP C C A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 NLRP4 147945 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 19 56373450 56373450 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZNF831 128611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 20 57767954 57767954 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ERG 2078 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 21 39755470 39755470 + Missense_Mutation SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 TSPEAR 54084 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 21 45987842 45987842 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 SGSM3 27352 hgsc.bcm.edu;ucsc.edu 37 22 40802519 40802519 + Silent SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 HDLBP 3069 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 2 242178175 242178175 + Missense_Mutation SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 MPHOSPH10 10199 broad.mit.edu;hgsc.bcm.edu 37 2 71366962 71366963 + In_Frame_Ins INS - - AGG novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PCGF1 84759 broad.mit.edu;hgsc.bcm.edu 37 2 74734182 74734183 + Frame_Shift_Del DEL CT CT - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 RETSAT 54884 hgsc.bcm.edu;ucsc.edu 37 2 85573123 85573123 + Silent SNP C C A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 NFKBIZ 64332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 3 101573954 101573954 + Missense_Mutation SNP G G T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 KIAA2018 205717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 3 113375944 113375944 + Missense_Mutation SNP G G C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 CENPE 1062 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 104101509 104101509 + Missense_Mutation SNP G G C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 RBM27 54439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 145598649 145598649 + Missense_Mutation SNP A A T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 KIAA0947 23379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 5489408 5489408 + Nonsense_Mutation SNP G G T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 DIMT1 27292 broad.mit.edu;hgsc.bcm.edu 37 5 61699551 61699570 + Frame_Shift_Del DEL CCTGCCGCCCGCGGCGGCGG CCTGCCGCCCGCGGCGGCGG - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 CCTGCCGCCCGCGGCGGCGG CCTGCCGCCCGCGGCGGCGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 FAM184A 79632 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 6 119345242 119345242 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 CALD1 800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 134617794 134617794 + Missense_Mutation SNP G G T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 EPHA1 2041 broad.mit.edu;hgsc.bcm.edu 37 7 143095693 143095693 + Splice_Site DEL C C - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 WDFY4 57705 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 10 50015972 50015972 + Missense_Mutation SNP A A G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 C14orf93 60686 hgsc.bcm.edu 37 14 23468114 23468114 + Missense_Mutation SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 MBTPS1 8720 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 16 84132706 84132706 + Missense_Mutation SNP G G A rs150244031 by1000genomes TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZFP82 284406 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 19 36884930 36884930 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 STK11IP 114790 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 2 220473923 220473923 + Silent SNP C C T rs185836682 by1000genomes;alternate_allele TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 AMD1 262 hgsc.bcm.edu 37 6 111214753 111214753 + Silent SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 NOTCH4 4855 hgsc.bcm.edu 37 6 32168996 32168996 + Missense_Mutation SNP C C T rs8192573 alternate_allele TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZNF462 58499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 9 109689044 109689044 + Missense_Mutation SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZNF462 58499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 9 109691641 109691641 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZFP37 7539 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 9 115806036 115806036 + Missense_Mutation SNP C C A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 SPTLC1 10558 broad.mit.edu;hgsc.bcm.edu 37 9 94808322 94808322 + Silent SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 AK5 26289 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 77759511 77759511 + Missense_Mutation SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 HNRNPU 3192 broad.mit.edu 37 1 245021520 245021520 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 SPAG6 9576 broad.mit.edu 37 10 22675803 22675803 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 SORCS3 22986 broad.mit.edu;mdanderson.org 37 10 106970992 106970992 + Missense_Mutation SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 FOLH1 2346 broad.mit.edu;mdanderson.org 37 11 49175930 49175930 + Nonsense_Mutation SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 NT5DC3 51559 broad.mit.edu 37 12 104171822 104171822 + Missense_Mutation SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 EBPL 84650 broad.mit.edu 37 13 50235138 50235138 + Missense_Mutation SNP T T G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 EBPL 84650 broad.mit.edu 37 13 50235160 50235160 + Missense_Mutation SNP G G C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 COCH 1690 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 14 31355089 31355089 + Missense_Mutation SNP C C G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PYGL 5836 broad.mit.edu;mdanderson.org 37 14 51375670 51375670 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PLD4 122618 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 14 105394159 105394159 + Missense_Mutation SNP G G T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 CHD2 1106 broad.mit.edu 37 15 93480819 93480819 + Frame_Shift_Del DEL A A - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 RPGRIP1L 23322 broad.mit.edu;mdanderson.org 37 16 53644927 53644927 + Missense_Mutation SNP C C G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 SGSH 6448 broad.mit.edu 37 17 78190941 78190941 + Missense_Mutation SNP T T G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 CEP192 55125 broad.mit.edu 37 18 13049583 13049583 + Silent SNP A A G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 CYP2A7 1549 broad.mit.edu;mdanderson.org 37 19 41384783 41384783 + Missense_Mutation SNP A A T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PXK 54899 broad.mit.edu 37 3 58395318 58395318 + Frame_Shift_Del DEL A A - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ANAPC4 29945 broad.mit.edu;mdanderson.org 37 4 25415322 25415322 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 DSPP 1834 broad.mit.edu 37 4 88536147 88536155 + In_Frame_Del DEL ACAGCAGCA ACAGCAGCA - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 ACAGCAGCA ACAGCAGCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ADH1B 125 broad.mit.edu;mdanderson.org 37 4 100234996 100234996 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 TDRD6 221400 broad.mit.edu 37 6 46661608 46661608 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ABCB5 340273 broad.mit.edu;bcgsc.ca 37 7 20698214 20698214 + Missense_Mutation SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PSD3 23362 broad.mit.edu 37 8 18725567 18725567 + Silent SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 FBXO16 157574 broad.mit.edu 37 8 28309794 28309794 + Missense_Mutation SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 UHRF2 115426 broad.mit.edu 37 9 6460652 6460652 + Silent SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ANXA1 301 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 9 75783993 75783993 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 CLDN23 137075 broad.mit.edu 37 8 8560233 8560234 + Frame_Shift_Ins INS - - T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ACAP3 116983 ucsc.edu;bcgsc.ca 37 1 1229272 1229272 + Missense_Mutation SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 CC2D1B 200014 ucsc.edu 37 1 52825206 52825206 + Missense_Mutation SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 EPPK1 83481 ucsc.edu;bcgsc.ca 37 8 144944498 144944498 + Missense_Mutation SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 KCNS1 3787 ucsc.edu 37 20 43726792 43726792 + Nonsense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 MEGF9 1955 ucsc.edu 37 9 123476127 123476127 + Silent SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 OR14A16 284532 ucsc.edu 37 1 247978544 247978544 + Missense_Mutation SNP G G A rs113112592 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PCSK9 255738 ucsc.edu 37 1 55505643 55505643 + Silent SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ABCD1 215 mdanderson.org 37 X 153006076 153006076 + Silent SNP C C T rs199997983 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ARPP21 10777 mdanderson.org;bcgsc.ca 37 3 35833882 35833882 + Missense_Mutation SNP C C A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 C17orf97 400566 mdanderson.org 37 17 263637 263637 + Missense_Mutation SNP T T A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 DPY19L1 23333 mdanderson.org 37 7 34987258 34987258 + Missense_Mutation SNP A A G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 DRD5 1816 mdanderson.org 37 4 9784542 9784542 + Missense_Mutation SNP A A C rs2227851 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ENAH 55740 mdanderson.org 37 1 225755060 225755060 + Missense_Mutation SNP T T A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 FRG1B 284802 mdanderson.org 37 20 29624046 29624046 + RNA SNP C C T rs75650664 byfrequency TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 GOLGA6L6 727832 mdanderson.org 37 15 20739825 20739825 + Missense_Mutation SNP G G A rs28590435 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 GOLGA8EP 390535 mdanderson.org 37 15 23445448 23445448 + RNA SNP A A G rs71221838 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 LRP3 4037 mdanderson.org 37 19 33697546 33697546 + Silent SNP C C T rs1056041 byfrequency TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 MUC4 4585 mdanderson.org 37 3 195510030 195510030 + Silent SNP C C G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 MUC4 4585 mdanderson.org 37 3 195510053 195510053 + Missense_Mutation SNP G G A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 MUC4 4585 mdanderson.org 37 3 195510068 195510068 + Missense_Mutation SNP T T A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 MUC5B 727897 mdanderson.org 37 11 1271809 1271809 + Missense_Mutation SNP G G A rs2334756 byfrequency TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 OPRK1 4986 mdanderson.org;bcgsc.ca 37 8 54141872 54141872 + Missense_Mutation SNP C C A novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 OR10H2 26538 mdanderson.org 37 19 15839267 15839267 + Silent SNP A A G rs148350582 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PRB2 653247 mdanderson.org 37 12 11546808 11546808 + Silent SNP A A G rs1921331 byfrequency TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PRR21 643905 mdanderson.org 37 2 240982219 240982219 + Missense_Mutation SNP A A G rs74006013 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PRSS3 5646 mdanderson.org 37 9 33796801 33796801 + Splice_Site SNP G G A rs143707562 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 SLC35G6 643664 mdanderson.org 37 17 7385436 7385436 + Missense_Mutation SNP C C A rs199848902 alternate_allele TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 TTN 7273 mdanderson.org;bcgsc.ca 37 2 179403401 179403401 + Missense_Mutation SNP C C T rs72648276 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 TUBA3D 113457 mdanderson.org 37 2 132240363 132240363 + Missense_Mutation SNP A A G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZNF208 7757 mdanderson.org 37 19 22155783 22155783 + Missense_Mutation SNP C C T rs199604702 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 ZNF773 374928 mdanderson.org 37 19 58016677 58016677 + Silent SNP A A G rs199730365 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 EXO1 9156 bcgsc.ca 37 1 242042205 242042205 + Missense_Mutation SNP C C T rs145789527 TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 AAGAB 79719 bcgsc.ca 37 15 67495157 67495166 + Frame_Shift_Del DEL AATTCAGTGC AATTCAGTGC - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 AATTCAGTGC AATTCAGTGC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 LTBP4 8425 bcgsc.ca 37 19 41112172 41112172 + Missense_Mutation SNP C C T novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PCGF1 84759 bcgsc.ca 37 2 74734183 74734184 + Frame_Shift_Del DEL CT CT - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 SLC13A3 64849 bcgsc.ca 37 20 45212262 45212262 + Missense_Mutation SNP A A G novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 DIMT1 27292 bcgsc.ca 37 5 61699552 61699571 + Frame_Shift_Del DEL CCTGCCGCCCGCGGCGGCGG CCTGCCGCCCGCGGCGGCGG - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 CCTGCCGCCCGCGGCGGCGG CCTGCCGCCCGCGGCGGCGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 PCDHA8 56140 bcgsc.ca 37 5 140222138 140222138 + Missense_Mutation SNP G G C rs144906391 byfrequency TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 C6orf201 404220 bcgsc.ca 37 6 4087901 4087901 + Missense_Mutation SNP T T C novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 EPHA1 2041 bcgsc.ca 37 7 143095694 143095694 + Frame_Shift_Del DEL C C - novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 MPHOSPH10 10199 bcgsc.ca 37 2 71366963 71366964 + In_Frame_Ins INS - - AGG novel TCGA-KL-8335-01A-11D-2310-10 TCGA-KL-8335-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375 8718bf72-de76-4fbd-9a6e-4692c67e38c1 3e52626f-e481-4859-8aab-36cd2b5f5375