Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ASH1L 55870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155308160 155308160 + Silent SNP G G C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d BAZ1B 9031 broad.mit.edu;hgsc.bcm.edu 37 7 72892732 72892732 + Silent SNP C C G novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d BEND6 221336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56883335 56883335 + Missense_Mutation SNP G G T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d C15orf52 388115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40628801 40628801 + Silent SNP C C T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d C5orf44 80006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64933559 64933559 + Silent SNP C C T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d C6orf221 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 74073548 74073548 + Missense_Mutation SNP C C T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d CAPN7 23473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 15292631 15292631 + Missense_Mutation SNP T T A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d CCDC9 26093 hgsc.bcm.edu 37 19 47774666 47774668 + In_Frame_Del DEL GAG GAG - rs138370983 bycluster;by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d CWC22 57703 hgsc.bcm.edu 37 2 180851432 180851432 + Missense_Mutation SNP T T A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d DDX59 83479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200617572 200617572 + Missense_Mutation SNP G G A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d DEPDC4 120863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100660755 100660755 + Silent SNP G G A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d DPP10 57628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 116485484 116485484 + Missense_Mutation SNP T T A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d DPP10 57628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 116485485 116485485 + Missense_Mutation SNP A A C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d EPB41L2 2037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131190764 131190764 + Missense_Mutation SNP A A C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d ERBB2 2064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37876087 37876087 + Missense_Mutation SNP G G C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d FAM40A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110589317 110589317 + Missense_Mutation SNP A A C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d FGFR1 2260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38314935 38314935 + Missense_Mutation SNP C C A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d FUT6 2528 hgsc.bcm.edu 37 19 5832160 5832161 + Frame_Shift_Ins INS - - T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d GPR174 84636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78427224 78427224 + Frame_Shift_Del DEL A A - novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d GPR4 2828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46094848 46094848 + Missense_Mutation SNP A A T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d GTF2A1 2957 broad.mit.edu;hgsc.bcm.edu 37 14 81659180 81659180 + Missense_Mutation SNP G G T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d HACE1 57531 broad.mit.edu;hgsc.bcm.edu 37 6 105192486 105192486 + Splice_Site SNP C C A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d HERPUD2 64224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 35678058 35678058 + Silent SNP C C A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d HMGXB4 10042 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 35659854 35659854 + Frame_Shift_Del DEL T T - novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d KIF13B 23303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 29018370 29018370 + Frame_Shift_Del DEL C C - novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d LAMA2 3908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 129663519 129663519 + Missense_Mutation SNP G G C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d LCA5 167691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 80203392 80203392 + Nonsense_Mutation SNP C C A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d LDOC1L 84247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 44893405 44893405 + Missense_Mutation SNP C C T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d LMBRD2 92255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 36117868 36117868 + Missense_Mutation SNP G G A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d MAP7D2 256714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 20081684 20081684 + Nonsense_Mutation SNP G G A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d MIDN 90007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1257108 1257108 + Missense_Mutation SNP C C T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d MSH2 4436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 47703619 47703619 + Missense_Mutation SNP T T C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d MSH3 4437 broad.mit.edu;ucsc.edu 37 5 79950742 79950750 + In_Frame_Del DEL CCCCCAGCT - - rs144629981 by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 CCCCCAGCT CCCCCAGCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d MYH2 4620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10447217 10447217 + Splice_Site SNP A A T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d MYH3 4621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10535182 10535182 + Missense_Mutation SNP G G A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d NCOR2 9612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124858994 124858994 + Missense_Mutation SNP C C T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d NDRG2 57447 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21486946 21486946 + Missense_Mutation SNP G G T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d NIPBL 25836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37006527 37006527 + Silent SNP G G A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d NLRP10 338322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 7981799 7981799 + Missense_Mutation SNP A A C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d NOTCH3 4854 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15298087 15298087 + Missense_Mutation SNP C C A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d PCDHGB4 8641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140768184 140768184 + Missense_Mutation SNP G G C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d PENK 5179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 57353861 57353861 + Missense_Mutation SNP T T G novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d PRRG3 79057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 150868604 150868604 + Missense_Mutation SNP A A T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d RICTOR 253260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38955727 38955727 + Missense_Mutation SNP C C T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d SCARB1 949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 125267275 125267275 + Missense_Mutation SNP A A G novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d SHISA2 387914 hgsc.bcm.edu 37 13 26624935 26624935 + Missense_Mutation SNP C C T rs111516934 bycluster;byfrequency;by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d SIRT1 23411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69676090 69676091 + Frame_Shift_Ins INS - - A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d SLC6A17 388662 broad.mit.edu;ucsc.edu 37 1 110709707 110709708 + Frame_Shift_Del DEL GG - - novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 GG GG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228881372 228881372 + Missense_Mutation SNP C C G novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d SVIL 6840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 29769552 29769552 + Missense_Mutation SNP T T C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d TBX19 9095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 168269666 168269666 + Silent SNP C C T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d TFEC 22797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 115624462 115624462 + Missense_Mutation SNP G G C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d TGFBRAP1 9392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 105914998 105914998 + Missense_Mutation SNP T T C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d TIMM17A 10440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201926640 201926640 + Missense_Mutation SNP G G T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d TNK1 8711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7291994 7291994 + Missense_Mutation SNP G G A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d TPPP 11076 broad.mit.edu;hgsc.bcm.edu 37 5 678108 678108 + Nonsense_Mutation SNP G G T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d TUBB1 81027 broad.mit.edu;ucsc.edu 37 20 57598805 57598805 + Missense_Mutation SNP A T T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d VPS54 51542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 64196097 64196097 + Silent SNP T T A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d ZCCHC12 170261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 117960298 117960298 + Missense_Mutation SNP G G T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d ZDHHC8 29801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 20127299 20127299 + Silent SNP C C A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d ZEB2 9839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 145157350 145157350 + Missense_Mutation SNP G G T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d ZFAND1 79752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 82626242 82626242 + Missense_Mutation SNP A A G novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d ZFP82 284406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36884269 36884269 + Missense_Mutation SNP G G C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d ZNF260 339324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37005751 37005751 + Silent SNP A A G novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d ZSCAN21 7589 hgsc.bcm.edu;ucsc.edu 37 7 99661552 99661552 + Frame_Shift_Del DEL A A - novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d AEBP1 165 broad.mit.edu 37 7 44152266 44152266 + Missense_Mutation SNP C T T rs144799697 byfrequency TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d CYP2D7P1 1564 broad.mit.edu 37 22 42538870 42538870 + Missense_Mutation SNP A C C rs2982057 by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d MAFA 389692 broad.mit.edu 37 8 144511954 144511956 + In_Frame_Del DEL TGG - - rs141816879 bycluster;by1000genomes TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 TGG TGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d NOTCH1 4851 broad.mit.edu 37 9 139396756 139396756 + Silent SNP C A A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d PRX 57716 broad.mit.edu 37 19 40900148 40900148 + Silent SNP G T T novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d RNF20 56254 broad.mit.edu 37 9 104324630 104324630 + Missense_Mutation SNP A C C novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d VHL 7428 broad.mit.edu 37 3 10183829 10183830 + Frame_Shift_Del DEL AC - - novel TCGA-A3-3385-01A-02D-1421-08 TCGA-A3-3385-11A-01D-1421-08 AC AC AC - AC AC Unknown Valid Somatic Phase_I WXS Illumina Miseq;PacBio Illumina GAIIx 0eb5edde-0ee0-4fc9-bc23-3015fc05258b dad5faae-e650-4b72-8baa-5a7f732a136d