Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID BAT2L2 0 hgsc.bcm.edu;ucsc.edu 37 1 171553099 171553099 + Missense_Mutation SNP C C G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 BPI 671 hgsc.bcm.edu;ucsc.edu 37 20 36940337 36940337 + Nonsense_Mutation SNP C C T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 C12orf64 0 hgsc.bcm.edu;ucsc.edu 37 12 80750654 80750654 + Silent SNP A A G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 CACNA2D1 781 hgsc.bcm.edu;ucsc.edu 37 7 81594953 81594953 + Missense_Mutation SNP C C T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 CCDC107 203260 hgsc.bcm.edu 37 9 35660625 35660625 + Silent SNP C C T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 CD97 976 hgsc.bcm.edu 37 19 14517988 14517988 + Missense_Mutation SNP A A C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 CDH23 64072 hgsc.bcm.edu;ucsc.edu 37 10 73199633 73199633 + Missense_Mutation SNP G G C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 CDK5RAP2 55755 hgsc.bcm.edu 37 9 123169477 123169477 + Missense_Mutation SNP G G C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 CES1 1066 hgsc.bcm.edu 37 16 55862682 55862682 + Missense_Mutation SNP G G A rs144498758 byfrequency TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 CLEC5A 23601 hgsc.bcm.edu;ucsc.edu 37 7 141635627 141635627 + Missense_Mutation SNP G G A novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 COL5A3 50509 hgsc.bcm.edu 37 19 10071434 10071434 + Missense_Mutation SNP T T C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 DHX37 57647 hgsc.bcm.edu 37 12 125455876 125455876 + Missense_Mutation SNP A A G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 DNAJC14 85406 hgsc.bcm.edu 37 12 56221611 56221611 + Nonsense_Mutation SNP G G A novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 DUSP8 1850 hgsc.bcm.edu;ucsc.edu 37 11 1580186 1580186 + Missense_Mutation SNP G G T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 EPRS 2058 hgsc.bcm.edu;ucsc.edu 37 1 220153534 220153534 + Missense_Mutation SNP C C T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 F9 2158 hgsc.bcm.edu;ucsc.edu 37 X 138633386 138633386 + Missense_Mutation SNP G G T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 FAM13B 51306 hgsc.bcm.edu;ucsc.edu 37 5 137347568 137347568 + Missense_Mutation SNP T T G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 FGF20 26281 hgsc.bcm.edu;ucsc.edu 37 8 16850793 16850793 + Missense_Mutation SNP G G C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 GPRIN1 114787 hgsc.bcm.edu 37 5 176026129 176026129 + Missense_Mutation SNP C C A novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 HLA-DQB1 3119 hgsc.bcm.edu 37 6 32629891 32629891 + Missense_Mutation SNP C C T rs74888860 bycluster;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552039 32552039 + Missense_Mutation SNP C C T rs150747106 by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552079 32552079 + Silent SNP G G A rs17884729 TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 KIAA0802 0 hgsc.bcm.edu 37 18 8819154 8819154 + Missense_Mutation SNP C C T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 LOXHD1 125336 hgsc.bcm.edu 37 18 44104452 44104452 + Missense_Mutation SNP G G T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 LTF 4057 hgsc.bcm.edu 37 3 46479585 46479585 + Missense_Mutation SNP G G T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 LYPLAL1 127018 hgsc.bcm.edu 37 1 219347283 219347283 + Silent SNP A A G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 MTHFD1 4522 hgsc.bcm.edu;ucsc.edu 37 14 64882205 64882205 + Missense_Mutation SNP G G A novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 MYO18A 399687 hgsc.bcm.edu;ucsc.edu 37 17 27417887 27417887 + Missense_Mutation SNP C C G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 NAA35 60560 hgsc.bcm.edu;ucsc.edu 37 9 88631485 88631485 + Missense_Mutation SNP A A G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 NBEA 26960 hgsc.bcm.edu;ucsc.edu 37 13 35758117 35758117 + Silent SNP G G T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 NDUFS2 4720 hgsc.bcm.edu;ucsc.edu 37 1 161183209 161183209 + Missense_Mutation SNP A A C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 OR6S1 341799 hgsc.bcm.edu;ucsc.edu 37 14 21109071 21109071 + Missense_Mutation SNP A A T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 PAGE1 8712 hgsc.bcm.edu 37 X 49454063 49454063 + Missense_Mutation SNP A A T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 PCSK2 5126 hgsc.bcm.edu 37 20 17437054 17437054 + Missense_Mutation SNP C C A novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 PGS1 9489 hgsc.bcm.edu;ucsc.edu 37 17 76396757 76396757 + Splice_Site SNP G G A novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 POMT2 29954 hgsc.bcm.edu;ucsc.edu 37 14 77746380 77746380 + Missense_Mutation SNP T T G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 PPP1R3A 5506 hgsc.bcm.edu 37 7 113518387 113518387 + Silent SNP A A G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 PPP2R3A 5523 hgsc.bcm.edu;ucsc.edu 37 3 135820908 135820908 + Missense_Mutation SNP A A T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 RIMBP2 23504 hgsc.bcm.edu;ucsc.edu 37 12 130897239 130897239 + Missense_Mutation SNP C C T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 SALL1 6299 hgsc.bcm.edu 37 16 51171109 51171109 + Missense_Mutation SNP G G T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 SGTA 6449 hgsc.bcm.edu 37 19 2769005 2769005 + Missense_Mutation SNP T T G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 SIPA1L2 57568 hgsc.bcm.edu;ucsc.edu 37 1 232600814 232600814 + Missense_Mutation SNP G G C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 SLC36A1 206358 hgsc.bcm.edu 37 5 150847285 150847285 + Missense_Mutation SNP T T A rs144783326 alternate_allele TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 SMC3 9126 hgsc.bcm.edu;ucsc.edu 37 10 112328742 112328742 + Missense_Mutation SNP A A T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 SPOCK1 6695 hgsc.bcm.edu 37 5 136403473 136403473 + Missense_Mutation SNP T T A novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 SPTBN4 57731 hgsc.bcm.edu 37 19 41009982 41009982 + Silent SNP C C T rs71358911 bycluster;byfrequency;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 SYPL1 6856 hgsc.bcm.edu;ucsc.edu 37 7 105739686 105739686 + Missense_Mutation SNP C C T novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 TANC1 85461 hgsc.bcm.edu;ucsc.edu 37 2 159992709 159992709 + Silent SNP C C G novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 TMPRSS13 84000 hgsc.bcm.edu 37 11 117772955 117772955 + Silent SNP T T C rs73020481 bycluster;byfrequency;by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 UNC80 285175 hgsc.bcm.edu;ucsc.edu 37 2 210794632 210794632 + Silent SNP A A C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 VWA3A 146177 hgsc.bcm.edu 37 16 22135024 22135024 + Missense_Mutation SNP A A C novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 ZNF574 64763 hgsc.bcm.edu 37 19 42584326 42584326 + Missense_Mutation SNP T T A novel TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84 ZNF717 100131827 hgsc.bcm.edu 37 3 75790797 75790797 + Missense_Mutation SNP C C T rs147946451 by1000genomes TCGA-B0-4838-01A-01D-1373-10 TCGA-B0-4838-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 6e9ffa47-f919-459c-bde8-0384d717db08 a4eff4fa-ce80-4e09-84b5-265feec77f84