Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21968702 21968702 + Missense_Mutation SNP G G T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c ADD3 120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 111877147 111877147 + Silent SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c AGBL1 123624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86838616 86838616 + Missense_Mutation SNP G G C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c AKAP9 10142 hgsc.bcm.edu;ucsc.edu 37 7 91708532 91708532 + Frame_Shift_Del DEL A A - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c AMAC1L3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7385621 7385621 + Silent SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c ANAPC5 51433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121758187 121758187 + Splice_Site SNP C C A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c BEND2 139105 broad.mit.edu;ucsc.edu 37 X 18219956 18219956 + Missense_Mutation SNP C G G novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32631593 32631593 + Missense_Mutation SNP G G A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c BSPRY 54836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116132237 116132237 + Missense_Mutation SNP C C A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c C10orf62 414157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99350271 99350271 + Missense_Mutation SNP G G C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c C13orf23 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39587314 39587314 + Missense_Mutation SNP G G A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c C17orf68 0 hgsc.bcm.edu 37 17 8139457 8139458 + Frame_Shift_Ins INS - - T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c CACNB1 782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37333729 37333729 + Silent SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c CCBE1 147372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 57136800 57136800 + Missense_Mutation SNP C C T rs121908251 alternate_allele TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c CCDC15 80071 hgsc.bcm.edu;ucsc.edu 37 11 124824706 124824706 + Frame_Shift_Del DEL G G - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c CCNC 892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 100009547 100009547 + Silent SNP T T A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c CHD9 80205 hgsc.bcm.edu;ucsc.edu 37 16 53296952 53296952 + Frame_Shift_Del DEL C C - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c CLCA1 1179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86947888 86947888 + Silent SNP A A G novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c EHBP1 23301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63101527 63101527 + Missense_Mutation SNP T T A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c EIF5 1983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 103802419 103802419 + Missense_Mutation SNP T T C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c ERBB2 2064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37866350 37866350 + Missense_Mutation SNP G G A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c ERI2 112479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20802204 20802204 + Silent SNP C C A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c FAM21B 55747 hgsc.bcm.edu 37 10 47909179 47909181 + In_Frame_Del DEL ATA ATA - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 ATA ATA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c FAM5B 57795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 177250548 177250548 + Missense_Mutation SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c GABRQ 55879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151818948 151818948 + Missense_Mutation SNP T T C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c GLB1 2720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33093265 33093265 + Missense_Mutation SNP A A C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c GRM6 2916 hgsc.bcm.edu 37 5 178410194 178410195 + Frame_Shift_Ins INS - - C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c HGFAC 3083 broad.mit.edu;ucsc.edu 37 4 3446996 3446996 + Frame_Shift_Del DEL C - - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c HIP1R 9026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123343990 123343990 + Silent SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c HLA-A 3105 hgsc.bcm.edu 37 6 29910622 29910622 + Silent SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c HOXB4 3214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46654154 46654154 + Missense_Mutation SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c HR 55806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 21985225 21985225 + Nonsense_Mutation SNP C C A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c ILVBL 10994 broad.mit.edu;hgsc.bcm.edu 37 19 15227242 15227242 + Missense_Mutation SNP G G T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c KATNA1 11104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 149944376 149944376 + Missense_Mutation SNP C C A rs142263647 alternate_allele TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c KBTBD7 84078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41767262 41767262 + Missense_Mutation SNP G G T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c KCTD8 386617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 44450161 44450161 + Missense_Mutation SNP T T C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c KDM3A 55818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86712976 86712976 + Missense_Mutation SNP G G A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c KIAA0319L 79932 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35917273 35917273 + Missense_Mutation SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c KLHL6 89857 broad.mit.edu;ucsc.edu 37 3 183211912 183211912 + Silent SNP G T T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c KRTCAP2 200185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155145769 155145771 + In_Frame_Del DEL CTA CTA - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 CTA CTA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86047101 86047101 + Missense_Mutation SNP A A G novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c MAN2B2 23324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 6611625 6611625 + Missense_Mutation SNP G G C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c MXRA5 25878 hgsc.bcm.edu;ucsc.edu 37 X 3240485 3240494 + Frame_Shift_Del DEL TGGAGTGTGT TGGAGTGTGT - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 TGGAGTGTGT TGGAGTGTGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c MYH2 4620 hgsc.bcm.edu;ucsc.edu 37 17 10427079 10427079 + Frame_Shift_Del DEL A A - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c MYO16 23026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 109672228 109672228 + Missense_Mutation SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c MYOF 26509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 95076526 95076526 + Silent SNP G G C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c OAF 220323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 120096481 120096481 + Nonsense_Mutation SNP G G T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c OAS3 4940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113379477 113379477 + Missense_Mutation SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c ODZ1 0 hgsc.bcm.edu 37 X 123654451 123654452 + Frame_Shift_Ins INS - - G novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c OR5D14 219436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55563209 55563209 + Missense_Mutation SNP C C A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c OR5T2 219464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55999686 55999686 + Missense_Mutation SNP G G T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c OR7A10 390892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14952067 14952067 + Missense_Mutation SNP C C G novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c OTUD4 54726 broad.mit.edu;hgsc.bcm.edu 37 4 146063450 146063450 + Missense_Mutation SNP G G A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c PABPC5 140886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 90691350 90691350 + Silent SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52595863 52595864 + Frame_Shift_Del DEL TC TC - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 TC TC TC - TC TC Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c PIK3AP1 118788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 98405300 98405300 + Silent SNP G G A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c PRKDC 5591 hgsc.bcm.edu 37 8 48805816 48805817 + Frame_Shift_Ins INS - - G rs11411516 bycluster;by1000genomes TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c PRMT6 55170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 107599560 107599560 + Missense_Mutation SNP C C A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c QTRT1 81890 hgsc.bcm.edu;ucsc.edu 37 19 10818039 10818039 + Frame_Shift_Del DEL G G - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c SIPA1L2 57568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 232538143 232538143 + Missense_Mutation SNP G G A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c SLC7A1 6541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 30098300 30098300 + Silent SNP G G A rs138795948 byfrequency TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c SLC7A4 6545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21385823 21385823 + Silent SNP C C T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c SOX7 83595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10583337 10583337 + Missense_Mutation SNP C C A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c SRSF4 6429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29475063 29475063 + Silent SNP G G C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c THSD7B 80731 hgsc.bcm.edu;ucsc.edu 37 2 137917883 137917884 + Frame_Shift_Del DEL GT GT - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 GT GT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c TMEM184A 202915 hgsc.bcm.edu 37 7 1586653 1586654 + In_Frame_Ins INS - - GCC rs112463195 bycluster;by1000genomes TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c TYRO3 7301 hgsc.bcm.edu 37 15 41865311 41865311 + Splice_Site SNP T T C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c VEZT 55591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95676229 95676229 + Silent SNP A A G novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c ZFPL1 7542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64854837 64854837 + Silent SNP C C A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c ZSCAN5A 79149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56732944 56732944 + Missense_Mutation SNP T T C novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c AGRN 375790 broad.mit.edu 37 1 985094 985094 + Frame_Shift_Del DEL C - - novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c BCDIN3D 144233 broad.mit.edu 37 12 50236870 50236870 + Missense_Mutation SNP T A A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c FGF6 2251 broad.mit.edu 37 12 4554409 4554409 + Missense_Mutation SNP G T T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c GBA 2629 broad.mit.edu 37 1 155205493 155205493 + Missense_Mutation SNP A T T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c HSPA7 3311 broad.mit.edu 37 1 161576641 161576641 + Silent SNP G T T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c PURG 29942 broad.mit.edu 37 8 30889379 30889379 + Missense_Mutation SNP C G G novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c SBK1 388228 broad.mit.edu 37 16 28331871 28331871 + Missense_Mutation SNP C T T novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c SLC5A2 6524 broad.mit.edu 37 16 31496212 31496212 + Missense_Mutation SNP A G G novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c SLC6A8 6535 broad.mit.edu 37 X 152954167 152954167 + Silent SNP C A A novel TCGA-B0-5110-01A-01D-1421-08 TCGA-B0-5110-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 527f7650-6818-4c7c-8e5f-4c9e8d3c0108 2b88b60a-5378-4380-9f83-10825a34e71c