Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCB5 340273 hgsc.bcm.edu 37 7 20685686 20685686 + Nonsense_Mutation SNP T T A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ABCB5 340273 hgsc.bcm.edu;ucsc.edu 37 7 20685684 20685684 + Frame_Shift_Del DEL T T - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ACSL6 23305 hgsc.bcm.edu;ucsc.edu 37 5 131321125 131321125 + Frame_Shift_Del DEL A A - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ACTR6 64431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100617614 100617614 + Missense_Mutation SNP A A G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ADAMTS7 11173 broad.mit.edu;hgsc.bcm.edu 37 15 79059785 79059785 + Missense_Mutation SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ALKBH6 84964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36504305 36504305 + Missense_Mutation SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb AMACR 23600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33989521 33989521 + Missense_Mutation SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ANKS3 124401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4776983 4776983 + Silent SNP G G C novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb AP1G2 8906 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24033327 24033327 + Missense_Mutation SNP T T C novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ARHGAP25 9938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 69034592 69034592 + Silent SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27057952 27057952 + Frame_Shift_Del DEL C C - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ATF4 468 hgsc.bcm.edu 37 22 39917910 39917912 + In_Frame_Del DEL GTG GTG - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 GTG GTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb C1orf204 284677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159811018 159811018 + Missense_Mutation SNP G G T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb C6orf146 0 hgsc.bcm.edu;ucsc.edu 37 6 4069047 4069058 + In_Frame_Del DEL CTTTTTGGTCCC CTTTTTGGTCCC - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CTTTTTGGTCCC CTTTTTGGTCCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb C8orf79 0 hgsc.bcm.edu;ucsc.edu 37 8 12870213 12870216 + Frame_Shift_Del DEL CTTA CTTA - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CTTA CTTA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb CAP2 10486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17556592 17556592 + Silent SNP A A G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb CCNB2 9133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59415824 59415824 + Missense_Mutation SNP A A T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb CDH1 999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68845698 68845698 + Missense_Mutation SNP A A G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb CEP152 22995 hgsc.bcm.edu;ucsc.edu 37 15 49088226 49088228 + In_Frame_Del DEL TTG TTG - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 TTG TTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb CHEK2 11200 broad.mit.edu;hgsc.bcm.edu 37 22 29091840 29091840 + Missense_Mutation SNP T T C rs74751600 TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb CHODL 140578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19629058 19629058 + Nonsense_Mutation SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb COL11A1 1301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 103355037 103355037 + Missense_Mutation SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb COL1A1 1277 broad.mit.edu;ucsc.edu 37 17 48266574 48266574 + Silent SNP A G G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb CRHR2 1395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 30701795 30701795 + Silent SNP G G T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb CXorf66 347487 hgsc.bcm.edu;ucsc.edu 37 X 139038512 139038512 + Missense_Mutation SNP G G T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb DAB2 1601 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 39376876 39376876 + Silent SNP T T A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FAM75D1 0 broad.mit.edu;hgsc.bcm.edu 37 9 84609412 84609412 + Nonsense_Mutation SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FAM76A 199870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28081734 28081734 + Missense_Mutation SNP C C A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FAM82A2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41046894 41046894 + Missense_Mutation SNP G G T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FBN3 84467 hgsc.bcm.edu;ucsc.edu 37 19 8183824 8183825 + Frame_Shift_Del DEL AC AC - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FGF17 8822 broad.mit.edu;hgsc.bcm.edu 37 8 21903771 21903771 + Silent SNP C C A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FIBP 9158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65653801 65653801 + Silent SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FMN2 56776 hgsc.bcm.edu 37 1 240370966 240370998 + In_Frame_Del DEL GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FNDC1 84624 hgsc.bcm.edu 37 6 159660797 159660797 + Missense_Mutation SNP A A G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb FOXD4L5 653427 hgsc.bcm.edu 37 9 70177922 70177923 + Frame_Shift_Ins INS - - C novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb GFM2 84340 hgsc.bcm.edu 37 5 74021852 74021852 + Missense_Mutation SNP A A T rs76339998 bycluster;byfrequency TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb GJB4 127534 broad.mit.edu;hgsc.bcm.edu 37 1 35227533 35227533 + Silent SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb GRIK3 2899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 37271904 37271904 + Missense_Mutation SNP C C A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb GRIN2B 2904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14019045 14019045 + Missense_Mutation SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb GSTA3 2940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52764776 52764776 + Missense_Mutation SNP T T G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ITGB6 3694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160994692 160994692 + Missense_Mutation SNP C C G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb LARP1B 55132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 129128464 129128464 + Missense_Mutation SNP A A G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb LDB1 8861 hgsc.bcm.edu;ucsc.edu 37 10 103870867 103870868 + Frame_Shift_Del DEL TG TG - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb MARCH5 54708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 94109483 94109483 + Missense_Mutation SNP T T G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb MKL2 57496 broad.mit.edu;ucsc.edu 37 16 14304164 14304164 + Silent SNP A G G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb MNDA 4332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158812131 158812131 + Missense_Mutation SNP A A G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb MYH13 8735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10253892 10253892 + Silent SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb MYO1B 4430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 192228923 192228923 + Nonsense_Mutation SNP C C A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb MYOM2 9172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 2005831 2005831 + Missense_Mutation SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb N4BP2L2 10443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33016602 33016602 + Missense_Mutation SNP C C G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb NEK1 4750 hgsc.bcm.edu;ucsc.edu 37 4 170321451 170321451 + Frame_Shift_Del DEL T T - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb PIP4K2B 8396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36943164 36943164 + Silent SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb PPP4R1 9989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 9570186 9570186 + Silent SNP T T A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb PSD2 84249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139217290 139217290 + Silent SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb PTCHD3 374308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27702183 27702183 + Missense_Mutation SNP G G T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb PTP4A2 8073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32377374 32377374 + Nonsense_Mutation SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb RASGRF1 5923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 79264229 79264229 + Silent SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb RBM17 84991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6143320 6143320 + Silent SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb RETSAT 54884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85578126 85578126 + Missense_Mutation SNP C C A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb RIMS2 9699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 104933998 104933998 + Missense_Mutation SNP T T C novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb RLF 6018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40661376 40661376 + Missense_Mutation SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb SCUBE3 222663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35212548 35212548 + Silent SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb SMC1B 27127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45779436 45779436 + Missense_Mutation SNP T T G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb SSPO 23145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 149485496 149485496 + Silent SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb SYTL2 54843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 85431940 85431940 + Missense_Mutation SNP G G A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb TRAF3IP2 10758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111912795 111912796 + Frame_Shift_Ins INS - - T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb TRY6 0 broad.mit.edu;ucsc.edu 37 7 142481278 142481278 + Missense_Mutation SNP G T T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191528 10191529 + Frame_Shift_Ins INS - - TT novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb VPS39 23339 hgsc.bcm.edu 37 15 42500325 42500325 + Silent SNP C C T rs149755806 bycluster;by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85674870 85674870 + Missense_Mutation SNP T T C novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75230717 75230717 + Frame_Shift_Del DEL C C - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ZBTB39 9880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57396861 57396861 + Missense_Mutation SNP A A G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ZFC3H1 196441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 72026187 72026187 + Missense_Mutation SNP T T A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ZMYND10 51364 broad.mit.edu;hgsc.bcm.edu 37 3 50378855 50378855 + Missense_Mutation SNP C C A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ZNF469 84627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88498466 88498466 + Missense_Mutation SNP C C T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb ZNF8 7554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58805702 58805702 + Silent SNP C C G rs142117860 alternate_allele TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb AADACL4 343066 broad.mit.edu 37 1 12726742 12726742 + Missense_Mutation SNP T C C novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb C10orf50 0 broad.mit.edu 37 10 26880266 26880266 + RNA SNP G A A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb GPR124 25960 broad.mit.edu 37 8 37693252 37693252 + Missense_Mutation SNP C G G novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb HERC2P4 440362 broad.mit.edu 37 16 32163812 32163812 + RNA SNP G T T novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb LOC728264 0 broad.mit.edu 37 5 148804230 148804231 + RNA DEL CT - - rs137913465 bycluster;by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb MUC4 4585 broad.mit.edu 37 3 195506627 195506627 + Missense_Mutation SNP T G G rs145875920 by1000genomes TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb NOS2 4843 broad.mit.edu 37 17 26087758 26087758 + Silent SNP G A A novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb Unknown 0 broad.mit.edu 37 16 28354223 28354223 + Missense_Mutation SNP G A A rs457403 bycluster TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb Unknown 0 broad.mit.edu 37 18 59420254 59420254 + RNA DEL T - - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb Unknown 0 broad.mit.edu 37 6 26605221 26605222 + RNA DEL CA - - novel TCGA-B0-5692-01A-11D-1534-10 TCGA-B0-5692-11A-01D-1534-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1af40135-8357-40b7-b711-478633a70f97 6758416d-3232-455a-9b9f-bd0e98caceeb