Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC4 10257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95859006 95859006 + Missense_Mutation SNP G G C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ABL1 25 broad.mit.edu;ucsc.edu 37 9 133729596 133729596 + Missense_Mutation SNP T G G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ALKBH6 84964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36504275 36504275 + Missense_Mutation SNP G G T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ALMS1 7840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73651859 73651859 + Missense_Mutation SNP T T A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ANKHD1 54882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139889648 139889648 + Missense_Mutation SNP T T G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ANO3 63982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26558968 26558968 + Missense_Mutation SNP T T C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ANPEP 290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90348359 90348359 + Missense_Mutation SNP T T C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ATP5SL 55101 hgsc.bcm.edu;ucsc.edu 37 19 41945825 41945825 + RNA SNP G G T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 BDP1 55814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70856036 70856036 + Missense_Mutation SNP A A C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 C19orf45 374877 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7573131 7573131 + Missense_Mutation SNP C C T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6714022 6714022 + Nonsense_Mutation SNP C C A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 CA6 765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9019022 9019022 + Silent SNP T T C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 CACNA1G 8913 broad.mit.edu;hgsc.bcm.edu 37 17 48647166 48647166 + Splice_Site SNP T T A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 COL27A1 85301 broad.mit.edu;hgsc.bcm.edu 37 9 116931616 116931616 + Missense_Mutation SNP C C T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 16957110 16957110 + Silent SNP A A G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 CYP2A13 1553 broad.mit.edu;hgsc.bcm.edu 37 19 41601828 41601828 + Missense_Mutation SNP G G T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 DEFA4 1669 broad.mit.edu;ucsc.edu 37 8 6793661 6793661 + Missense_Mutation SNP A G G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 EPPK1 83481 hgsc.bcm.edu 37 8 144940462 144940462 + Silent SNP G G A rs56146920 bycluster TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 EPPK1 83481 hgsc.bcm.edu 37 8 144940474 144940474 + Silent SNP C C T rs56015972 bycluster TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 EPPK1 83481 hgsc.bcm.edu 37 8 144940540 144940540 + Silent SNP G G A rs56034452 bycluster TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FAM105A 54491 hgsc.bcm.edu;ucsc.edu 37 5 14601213 14601213 + Frame_Shift_Del DEL T T - novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FAM186A 121006 broad.mit.edu;ucsc.edu 37 12 50748623 50748623 + Missense_Mutation SNP A C C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FASN 2194 broad.mit.edu;hgsc.bcm.edu 37 17 80041659 80041659 + Missense_Mutation SNP G G A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FASTKD1 79675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170411720 170411720 + Silent SNP T T C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127645724 127645724 + Silent SNP G G A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FCN3 8547 hgsc.bcm.edu;ucsc.edu 37 1 27695848 27695852 + Frame_Shift_Del DEL CGGTA CGGTA - novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 CGGTA CGGTA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 GAB4 128954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17449242 17449242 + Silent SNP T T A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 GSTA4 2941 hgsc.bcm.edu;ucsc.edu 37 6 52850359 52850361 + In_Frame_Del DEL TTG TTG - novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 TTG TTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 HRC 3270 hgsc.bcm.edu 37 19 49657754 49657754 + Silent SNP G G A rs145933641 byfrequency TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 IL21R 50615 broad.mit.edu;ucsc.edu 37 16 27455987 27455987 + Missense_Mutation SNP A G G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ISOC1 51015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 128441025 128441025 + Missense_Mutation SNP G G C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 KIAA0240 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42832809 42832809 + Silent SNP G G A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 L1TD1 54596 hgsc.bcm.edu 37 1 62675673 62675673 + Missense_Mutation SNP G G T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 L1TD1 54596 hgsc.bcm.edu 37 1 62675674 62675674 + Missense_Mutation SNP C C A rs141196718 by1000genomes TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 LIMA1 51474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50571222 50571222 + Silent SNP T T C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 LRRC57 255252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42837393 42837393 + Missense_Mutation SNP C C A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 MAN2A1 4124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 109110522 109110522 + Missense_Mutation SNP G G C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129906188 129906188 + Nonsense_Mutation SNP C C A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 MLLT10 8028 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 22023041 22023041 + Silent SNP A A C novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 MLLT4 4301 broad.mit.edu;ucsc.edu 37 6 168349093 168349093 + Missense_Mutation SNP T G G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11217230 11217230 + Missense_Mutation SNP C C T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 MYO3A 53904 broad.mit.edu;ucsc.edu 37 10 26377180 26377180 + Missense_Mutation SNP G T T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 NCOA6 23054 hgsc.bcm.edu;ucsc.edu 37 20 33337538 33337538 + Silent SNP A A G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 NMUR2 56923 broad.mit.edu;hgsc.bcm.edu 37 5 151784191 151784191 + Missense_Mutation SNP G G A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ODZ1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123838862 123838862 + Splice_Site SNP C C A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 OR5J2 282775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55944821 55944821 + Missense_Mutation SNP C C G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 PATL2 197135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44964245 44964245 + Missense_Mutation SNP C C A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643401 52643401 + Frame_Shift_Del DEL T T - novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T T - T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 PDE3A 5139 broad.mit.edu;ucsc.edu 37 12 20801757 20801757 + Missense_Mutation SNP G T T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 PIGN 23556 hgsc.bcm.edu;ucsc.edu 37 18 59821799 59821799 + Silent SNP C C G rs144304758 by1000genomes;alternate_allele TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 PPP1R9A 55607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94881334 94881334 + Missense_Mutation SNP A A T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 PRPS2 5634 broad.mit.edu;ucsc.edu 37 X 12817354 12817354 + Missense_Mutation SNP G A A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121651686 121651686 + Silent SNP G G A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 RPTOR 57521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78727975 78727975 + Missense_Mutation SNP G G A rs148973724 TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 RTTN 25914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 67742714 67742714 + Missense_Mutation SNP G G A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 SDK2 54549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71415436 71415436 + Silent SNP G G T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 SHANK3 85358 hgsc.bcm.edu;ucsc.edu 37 22 51143424 51143425 + Frame_Shift_Ins INS - - A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 SHISA4 149345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201860697 201860697 + Splice_Site SNP G G T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 SLITRK5 26050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 88329572 88329572 + Missense_Mutation SNP G G T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 SPATA5 166378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123868400 123868400 + Nonsense_Mutation SNP G G T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 SYT15 83849 hgsc.bcm.edu 37 10 46968665 46968665 + Silent SNP G G A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 TAZ 6901 broad.mit.edu;hgsc.bcm.edu 37 X 153649048 153649048 + Missense_Mutation SNP C C G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 TMEM151B 441151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44240820 44240820 + Silent SNP C C T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu 37 19 31770507 31770507 + Silent SNP G G A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12009344 12009344 + Missense_Mutation SNP A A G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191479 10191480 + Frame_Shift_Ins INS - - T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FAM104A 84923 broad.mit.edu 37 17 71205829 71205829 + Missense_Mutation SNP C G G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FANCA 2175 broad.mit.edu 37 16 89877420 89877420 + Missense_Mutation SNP C G G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FANCF 2188 broad.mit.edu 37 11 22647097 22647097 + Frame_Shift_Del DEL C - - novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 FARP1 10160 broad.mit.edu 37 13 99092447 99092447 + Missense_Mutation SNP A G G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 LOC442421 0 broad.mit.edu 37 9 66502885 66502885 + RNA DEL A - - rs72184572 alternate_allele TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 NEFM 4741 broad.mit.edu 37 8 24775663 24775663 + Silent SNP G A A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 PCDH11Y 83259 broad.mit.edu 37 Y 4966255 4966255 + Splice_Site SNP G T T novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 POTEC 388468 broad.mit.edu 37 18 14542931 14542931 + Missense_Mutation SNP C T T rs45554841 bycluster;byfrequency;by1000genomes TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 Unknown 0 broad.mit.edu 37 18 109344 109344 + RNA SNP T A A novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 Unknown 0 broad.mit.edu 37 9 68413581 68413581 + RNA SNP G C C rs1809619 byfrequency TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 Unknown 0 broad.mit.edu 37 9 70182345 70182346 + RNA DEL TG - - novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9 ZNF469 84627 broad.mit.edu 37 16 88498001 88498001 + Missense_Mutation SNP C G G novel TCGA-B0-5696-01A-11D-1534-10 TCGA-B0-5696-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 48b270af-07f2-4cb5-ace2-e2676ffaccd9 8473e2bb-e346-4948-bb65-0f2b7b80b6c9