Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCD4 5826 broad.mit.edu;ucsc.edu 37 14 74763081 74763081 + Missense_Mutation SNP A G G rs145669133 byfrequency TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb ANK2 287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 114275680 114275680 + Missense_Mutation SNP C C T rs148760530 TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb BTNL8 79908 broad.mit.edu;hgsc.bcm.edu 37 5 180377360 180377360 + Nonsense_Mutation SNP T T A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb C14orf135 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 60587988 60587988 + Missense_Mutation SNP G G T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb C16orf52 730094 hgsc.bcm.edu 37 16 22019647 22019647 + Frame_Shift_Del DEL G G - novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb C21orf45 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33642036 33642036 + Missense_Mutation SNP T T C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb CR1 1378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 207785153 207785153 + Missense_Mutation SNP T T A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb DDO 8528 broad.mit.edu;hgsc.bcm.edu 37 6 110714419 110714419 + Silent SNP C C T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7669721 7669721 + Silent SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb DNAH6 1768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84756081 84756081 + Missense_Mutation SNP T T A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb DNMT3A 1788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 25458658 25458658 + Frame_Shift_Del DEL A A - novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb EGR1 1958 broad.mit.edu;hgsc.bcm.edu 37 5 137802682 137802682 + Missense_Mutation SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb ENPP2 5168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 120633703 120633703 + Missense_Mutation SNP C C A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb FREM2 341640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39264065 39264065 + Missense_Mutation SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb GLB1 2720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33087643 33087643 + Missense_Mutation SNP T T G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb GPR119 139760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129518457 129518457 + Missense_Mutation SNP G G A rs138209054 byfrequency;alternate_allele TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb GPR143 4935 hgsc.bcm.edu;ucsc.edu 37 X 9714193 9714193 + Silent SNP C C T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb HELLS 3070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96352150 96352150 + Splice_Site SNP A A T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb HEY1 23462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 80677934 80677934 + Missense_Mutation SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb IQSEC2 23096 broad.mit.edu;hgsc.bcm.edu 37 X 53284001 53284001 + Missense_Mutation SNP C C T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb JRK 8629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 143746492 143746492 + Missense_Mutation SNP T T A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb KCNH5 27133 broad.mit.edu;ucsc.edu 37 14 63473094 63473094 + Nonsense_Mutation SNP G T T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb KLF9 687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 73027803 73027803 + Silent SNP A A G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb KMO 8564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 241723981 241723981 + Silent SNP C C G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb LRBA 987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 151511868 151511868 + Missense_Mutation SNP C C G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb LRRK1 79705 broad.mit.edu;hgsc.bcm.edu 37 15 101606007 101606007 + Missense_Mutation SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb LRRTM3 347731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 68687373 68687373 + Missense_Mutation SNP C C A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb MT1G 4495 broad.mit.edu;ucsc.edu 37 16 56700810 56700810 + Missense_Mutation SNP T C C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11217290 11217290 + Missense_Mutation SNP T T G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T T G T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb NCOA4 8031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 51582263 51582263 + Missense_Mutation SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb NEUROG2 63973 hgsc.bcm.edu 37 4 113435835 113435835 + Missense_Mutation SNP G G C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb NKD1 85407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50667285 50667285 + Missense_Mutation SNP C C T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb OR2T2 401992 broad.mit.edu;hgsc.bcm.edu 37 1 248616344 248616344 + Missense_Mutation SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb OVCH2 341277 broad.mit.edu;ucsc.edu 37 11 7723751 7723751 + Missense_Mutation SNP A G G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb PARK2 5071 broad.mit.edu;ucsc.edu 37 6 161781136 161781136 + Silent SNP T C C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb PHF3 23469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 64421671 64421671 + Missense_Mutation SNP A A G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb PIGQ 9091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 629095 629095 + Missense_Mutation SNP T T C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110487349 110487349 + Missense_Mutation SNP A A T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87684097 87684097 + Silent SNP T T A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb RBM25 58517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73550237 73550237 + Silent SNP A A G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb RDM1 201299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34249624 34249624 + Silent SNP C C T rs112692396 alternate_allele TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb RPS6KC1 26750 broad.mit.edu;ucsc.edu 37 1 213341274 213341274 + Silent SNP C T T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb S1PR3 1903 broad.mit.edu;ucsc.edu 37 9 91616249 91616249 + Missense_Mutation SNP T C C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb SCMH1 22955 broad.mit.edu;hgsc.bcm.edu 37 1 41579130 41579130 + Missense_Mutation SNP G G T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb SEPT11 55752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77941776 77941776 + Silent SNP T T G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb SERPINB5 5268 broad.mit.edu;hgsc.bcm.edu 37 18 61154179 61154179 + Missense_Mutation SNP G G C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb SIGLEC12 89858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52004612 52004612 + Missense_Mutation SNP C C T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb SLC1A7 6512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53608095 53608095 + Silent SNP C C T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb SLC38A10 124565 hgsc.bcm.edu 37 17 79225074 79225075 + Frame_Shift_Ins INS - - T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb SYT15 83849 broad.mit.edu;hgsc.bcm.edu 37 10 46962003 46962003 + Silent SNP G G C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb TAF15 8148 hgsc.bcm.edu 37 17 34171576 34171605 + In_Frame_Del DEL GGTGGCTATGGTGGAGACAGAAGCAGCGGT GGTGGCTATGGTGGAGACAGAAGCAGCGGT - novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 GGTGGCTATGGTGGAGACAGAAGCAGCGGT GGTGGCTATGGTGGAGACAGAAGCAGCGGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb TBC1D3C 414060 hgsc.bcm.edu 37 17 34581565 34581566 + Frame_Shift_Ins INS - - G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb TBC1D3F 84218 hgsc.bcm.edu 37 17 36338191 36338192 + Frame_Shift_Ins INS - - G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb TRHR 7201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110131432 110131432 + Silent SNP C C T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb TXLNA 200081 hgsc.bcm.edu 37 1 32658881 32658881 + Missense_Mutation SNP T T C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb TXLNA 200081 hgsc.bcm.edu;ucsc.edu 37 1 32658884 32658885 + Frame_Shift_Ins INS - - C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb TXLNA 200081 hgsc.bcm.edu;ucsc.edu 37 1 32658886 32658887 + Frame_Shift_Del DEL GC GC - novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb VPS39 23339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42454241 42454241 + Missense_Mutation SNP C C T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb WASL 8976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123335918 123335918 + Missense_Mutation SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb ZMAT2 153527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140085215 140085215 + Silent SNP G G T rs143727913 byfrequency;alternate_allele TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb ZMIZ1 57178 hgsc.bcm.edu 37 10 81070821 81070822 + Frame_Shift_Ins INS - - C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb ZMYM5 9205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20426164 20426164 + Missense_Mutation SNP C C A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb ZNF184 7738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27420477 27420477 + Silent SNP G G A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb C5orf33 0 broad.mit.edu 37 5 36241678 36241680 + In_Frame_Del DEL CCA - - novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 CCA CCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb C9orf125 0 broad.mit.edu 37 9 104239059 104239059 + Missense_Mutation SNP T C C novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb CD209 30835 broad.mit.edu 37 19 7810629 7810629 + Missense_Mutation SNP G A A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb DFNB31 25861 broad.mit.edu 37 9 117165567 117165567 + Missense_Mutation SNP G T T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb FOXS1 2307 broad.mit.edu 37 20 30432839 30432839 + Silent SNP C T T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb ISL2 64843 broad.mit.edu 37 15 76634124 76634124 + Missense_Mutation SNP C T T novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb LOC494141 494141 broad.mit.edu 37 11 18231982 18231982 + RNA SNP G A A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb LOC644669 644669 broad.mit.edu 37 18 15325675 15325675 + RNA SNP C A A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb MST1P2 11209 broad.mit.edu 37 1 16974549 16974549 + RNA SNP C G G rs71240336 TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb MST1P9 0 broad.mit.edu 37 1 17085848 17085848 + Missense_Mutation SNP G A A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb PLAC4 191585 broad.mit.edu 37 21 42551676 42551677 + Translation_Start_Site INS - A A novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb PREX1 57580 broad.mit.edu 37 20 47246011 47246011 + Missense_Mutation SNP A G G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb Unknown 0 broad.mit.edu 37 17 25758643 25758644 + RNA DEL GA - - novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb Unknown 0 broad.mit.edu 37 17 62117156 62117157 + RNA DEL AC - - novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb Unknown 0 broad.mit.edu 37 22 20976999 20976999 + RNA SNP C G G novel TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb Unknown 0 broad.mit.edu 37 9 66466327 66466327 + RNA DEL G - - rs141830071 TCGA-B0-5697-01A-11D-1534-10 TCGA-B0-5697-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66 2641ff9a-cb27-4feb-b9ec-c191e56673bb