Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMDEC1 27299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 24242084 24242084 + Missense_Mutation SNP T T C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 ANKRD30A 91074 broad.mit.edu;hgsc.bcm.edu 37 10 37422855 37422855 + Missense_Mutation SNP T T G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 ANKRD34C 390616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 79585881 79585881 + Silent SNP C C A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 BCL9L 283149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118774132 118774132 + Missense_Mutation SNP C C A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32900684 32900684 + Missense_Mutation SNP G G C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 BTNL3 10917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180432814 180432814 + Missense_Mutation SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 C12orf35 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32134405 32134405 + Silent SNP T T C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 C8B 732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 57415368 57415368 + Missense_Mutation SNP G G A rs150146785 bycluster;byfrequency;by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201029869 201029869 + Missense_Mutation SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 CADPS2 93664 hgsc.bcm.edu;ucsc.edu 37 7 122114547 122114547 + Frame_Shift_Del DEL C C - novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 CENPC1 1060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68358686 68358686 + Missense_Mutation SNP G G C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 CLDN12 9069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 90042424 90042424 + Missense_Mutation SNP C C G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 CYB5A 1528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 71930704 71930704 + Silent SNP A A G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 DAXX 1616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33287883 33287883 + Missense_Mutation SNP T T A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 DDX4 54514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55086409 55086409 + Missense_Mutation SNP G G A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 DNAJB6 10049 hgsc.bcm.edu 37 7 157160099 157160100 + Frame_Shift_Ins INS - - GA novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 DNAJC14 85406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56216895 56216895 + Silent SNP T T C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 EFCAB6 64800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 44004465 44004465 + Missense_Mutation SNP C C A rs55698170 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21226401 21226401 + Silent SNP T T C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 ERI1 90459 hgsc.bcm.edu 37 8 8887543 8887545 + In_Frame_Del DEL AAC AAC - rs140242735 bycluster;by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 AAC AAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 FAM13B 51306 broad.mit.edu;ucsc.edu 37 5 137278882 137278882 + Silent SNP C T T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 FBN2 2201 hgsc.bcm.edu;ucsc.edu 37 5 127647000 127647000 + Frame_Shift_Del DEL A A - novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 FBXO41 150726 broad.mit.edu;hgsc.bcm.edu 37 2 73496700 73496700 + Missense_Mutation SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 FNIP2 57600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159789573 159789573 + Silent SNP G G C rs143166945 by1000genomes;alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 FUS 2521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31193930 31193930 + Silent SNP G G A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 FUS 2521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31193931 31193931 + Missense_Mutation SNP G G C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 GNPTAB 79158 hgsc.bcm.edu;ucsc.edu 37 12 102158580 102158580 + Frame_Shift_Del DEL T T - novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 HOXB4 3214 broad.mit.edu;ucsc.edu 37 17 46654168 46654168 + Silent SNP G C C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 IGSF1 3547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 130410026 130410026 + Silent SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 KATNB1 10300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57785950 57785950 + Silent SNP C C T rs141576914 alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 KDM5C 8242 hgsc.bcm.edu;ucsc.edu 37 X 53247129 53247135 + Frame_Shift_Del DEL CCACCTT CCACCTT - novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 CCACCTT CCACCTT CCACCTT - CCACCTT CCACCTT Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 KIAA0564 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42461433 42461433 + Missense_Mutation SNP A A G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 KIAA0586 9786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58954685 58954685 + Missense_Mutation SNP T T G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 KIAA1109 84162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123150305 123150305 + Silent SNP T T C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 KIAA1109 84162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123150307 123150307 + Nonsense_Mutation SNP C C A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 KIF20A 10112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137519224 137519224 + Missense_Mutation SNP A A G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 LBP 3929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36978015 36978015 + Silent SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 MACROD2 140733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 15967710 15967710 + Splice_Site SNP G G C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G G C G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 MAP3K2 10746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128066323 128066323 + Missense_Mutation SNP C C A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 MED13 9969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60140520 60140520 + Missense_Mutation SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 MNS1 55329 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56735643 56735643 + Nonsense_Mutation SNP A A C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 MYO5A 4644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52645836 52645836 + Missense_Mutation SNP A A C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 OR6A2 8590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6816240 6816240 + Missense_Mutation SNP G G A rs2741745 TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 OR9K2 441639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55523606 55523606 + Silent SNP A A G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PDE6B 5158 broad.mit.edu;ucsc.edu 37 4 649741 649741 + Silent SNP C G G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PGM2 55276 broad.mit.edu;ucsc.edu 37 4 37839173 37839173 + Missense_Mutation SNP A G G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PHF8 23133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54044120 54044120 + Missense_Mutation SNP G G T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PPFIA3 8541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49641602 49641602 + Missense_Mutation SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PROX2 283571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75329252 75329252 + Missense_Mutation SNP A A C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PRR22 163154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5784427 5784427 + Missense_Mutation SNP G G T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PSD3 23362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 18662289 18662289 + Missense_Mutation SNP G G A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PUS7 54517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 105111238 105111238 + Missense_Mutation SNP G G A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 RTTN 25914 hgsc.bcm.edu 37 18 67871413 67871413 + Silent SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 RTTN 25914 hgsc.bcm.edu;ucsc.edu 37 18 67871409 67871411 + In_Frame_Del DEL CAG CAG - novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 CAG CAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SCN7A 6332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 167328884 167328884 + Missense_Mutation SNP G G A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SDHA 6389 hgsc.bcm.edu;ucsc.edu 37 5 236649 236649 + Missense_Mutation SNP C C T rs76896145 bycluster;byfrequency TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SLC12A7 10723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1065466 1065466 + Missense_Mutation SNP G G A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SLC38A10 124565 hgsc.bcm.edu 37 17 79219501 79219503 + In_Frame_Del DEL ATG ATG - rs10569617 bycluster;by1000genomes TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 ATG ATG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SLC44A3 126969 broad.mit.edu;ucsc.edu 37 1 95286513 95286513 + Silent SNP A G G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SLK 9748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105750469 105750469 + Missense_Mutation SNP A A G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SNX25 83891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 186244946 186244946 + Missense_Mutation SNP G G A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SPNS3 201305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4389784 4389784 + Silent SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SPRED2 200734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65541212 65541212 + Missense_Mutation SNP C C T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 SYDE1 85360 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15223181 15223181 + Missense_Mutation SNP C C A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 TEK 7010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 27202840 27202840 + Missense_Mutation SNP C C G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 TOM1L2 146691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17810845 17810845 + Missense_Mutation SNP T T A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 TTI1 9675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36641291 36641291 + Missense_Mutation SNP G G T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179439168 179439168 + Nonsense_Mutation SNP A A C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 XKR4 114786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 56436104 56436104 + Missense_Mutation SNP G G T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 YME1L1 10730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27420850 27420850 + Missense_Mutation SNP C C G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 ZNF180 7733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45004270 45004270 + Missense_Mutation SNP G G A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 ZNF714 148206 broad.mit.edu;hgsc.bcm.edu 37 19 21300510 21300510 + Missense_Mutation SNP A A G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 KDM5C 8242 ucsc.edu 37 X 53247143 53247143 + Silent SNP C C G novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C C G C C Unknown Valid Somatic . WXS PGM . . Illumina HiSeq b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 ABL1 25 broad.mit.edu 37 9 133589643 133589643 + Translation_Start_Site SNP C T T novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 BMS1 9790 broad.mit.edu 37 10 43288427 43288427 + Silent SNP T C C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 LDB3 11155 broad.mit.edu 37 10 88476170 88476170 + Missense_Mutation SNP T C C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PCDHB8 56128 broad.mit.edu 37 5 140559035 140559035 + Missense_Mutation SNP G A A rs149925643 alternate_allele TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PKHD1L1 93035 broad.mit.edu 37 8 110445335 110445335 + Missense_Mutation SNP G A A novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 PRB1 5542 broad.mit.edu 37 12 11506399 11506399 + Missense_Mutation SNP T C C rs76491584 TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 Unknown 0 broad.mit.edu 37 11 43283988 43283988 + RNA SNP T C C novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 Unknown 0 broad.mit.edu 37 1 700532 700532 + RNA DEL T - - novel TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541 Unknown 0 broad.mit.edu 37 22 18844615 18844615 + RNA SNP A G G rs140416 TCGA-B2-5641-01A-01D-1534-10 TCGA-B2-5641-10A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b49d3bb5-74fe-4ff0-9b47-131bcb455855 d7319ab4-8498-4599-aad8-54ab2174c541