Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACVR2A 92 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 148677842 148677842 + Missense_Mutation SNP G G T rs111862877 alternate_allele TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed APOH 350 broad.mit.edu;ucsc.edu 37 17 64213023 64213023 + Missense_Mutation SNP T G G novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed ATP5G2 517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54063038 54063038 + Missense_Mutation SNP C C A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed ATRX 546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 76890185 76890185 + Missense_Mutation SNP A A C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52436345 52436345 + Frame_Shift_Del DEL G G - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G G - G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed C11orf94 143678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 45928173 45928173 + Missense_Mutation SNP G G A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed C1orf14 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182869151 182869151 + Silent SNP G G A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed C2orf29 55571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 101885856 101885856 + Missense_Mutation SNP A A C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed C6orf62 81688 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24706388 24706388 + Missense_Mutation SNP G G T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed CRIPAK 285464 hgsc.bcm.edu 37 4 1388693 1388693 + Missense_Mutation SNP C C G rs78906219 TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed CTCF 10664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67660544 67660544 + Missense_Mutation SNP C C A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed CWC25 54883 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36963045 36963045 + Missense_Mutation SNP C C T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed DENND2D 79961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111743023 111743023 + Missense_Mutation SNP A A T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed DGKK 139189 hgsc.bcm.edu 37 X 50213423 50213423 + Silent SNP T T A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed DMKN 93099 hgsc.bcm.edu 37 19 36002423 36002423 + Missense_Mutation SNP C C T rs145440628 TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed EMID2 136227 broad.mit.edu;hgsc.bcm.edu 37 7 101063346 101063346 + Missense_Mutation SNP T T A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed ESRRA 2101 hgsc.bcm.edu 37 11 64083296 64083298 + In_Frame_Del DEL GGG GGG - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GGG GGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed FLAD1 80308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154962043 154962043 + Silent SNP T T G novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed GDF3 9573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7842617 7842617 + Missense_Mutation SNP G G T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed GDF3 9573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7842665 7842665 + Missense_Mutation SNP T T C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed GEMIN4 50628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 649272 649272 + Missense_Mutation SNP G G C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed HGC6.3 100128124 hgsc.bcm.edu 37 6 168377119 168377119 + Missense_Mutation SNP T T C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed KCNN2 3781 hgsc.bcm.edu 37 5 113698631 113698632 + In_Frame_Ins INS - - GCC novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed KLRC1 3821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10603588 10603588 + Missense_Mutation SNP G G T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed KRT78 196374 hgsc.bcm.edu;ucsc.edu 37 12 53242598 53242615 + In_Frame_Del DEL CCTGCTGCTGAAGCCGCC CCTGCTGCTGAAGCCGCC - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 CCTGCTGCTGAAGCCGCC CCTGCTGCTGAAGCCGCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197538 39197538 + Missense_Mutation SNP G G T rs146863522 by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197549 39197549 + Missense_Mutation SNP G G C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed KRTAP1-3 81850 hgsc.bcm.edu 37 17 39190953 39190953 + Missense_Mutation SNP G G C rs78298475 TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed KRTAP1-3 81850 hgsc.bcm.edu 37 17 39190954 39190954 + Silent SNP G G A rs75033421 TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed L1TD1 54596 hgsc.bcm.edu 37 1 62675673 62675673 + Missense_Mutation SNP G G T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed L1TD1 54596 hgsc.bcm.edu 37 1 62675674 62675674 + Missense_Mutation SNP C C A rs141196718 by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed LHX1 3975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35297675 35297675 + Missense_Mutation SNP A A C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed MAGEC1 9947 hgsc.bcm.edu 37 X 140994055 140994068 + Frame_Shift_Del DEL GAGAGAACTCAGAG GAGAGAACTCAGAG - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GAGAGAACTCAGAG GAGAGAACTCAGAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed MAP1A 4130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43821515 43821515 + Missense_Mutation SNP C C A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed MEX3C 51320 hgsc.bcm.edu 37 18 48723146 48723154 + In_Frame_Del DEL GCCGCCGCG GCCGCCGCG - rs147438518 bycluster;by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GCCGCCGCG GCCGCCGCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49427164 49427164 + Missense_Mutation SNP C C T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed MRO 83876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 48345981 48345981 + Silent SNP T T C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed MRVI1 10335 broad.mit.edu;ucsc.edu 37 11 10624763 10624763 + Silent SNP C G G novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed MUC4 4585 hgsc.bcm.edu 37 3 195508499 195508499 + Missense_Mutation SNP C C T rs62282475 by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed NCL 4691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232323070 232323070 + Missense_Mutation SNP T T C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed NPAS4 266743 hgsc.bcm.edu 37 11 66189604 66189604 + Silent SNP G G A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed PAK4 10298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39668357 39668357 + Missense_Mutation SNP G G A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed PCTP 58488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 53853436 53853436 + Missense_Mutation SNP G G C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed PGR 5241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 100933375 100933375 + Missense_Mutation SNP C C G novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed PLEKHG3 26030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65204095 65204095 + Splice_Site SNP T T C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed RAD51AP1 10635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 4668106 4668106 + Missense_Mutation SNP T T A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160273849 160273849 + Missense_Mutation SNP C C T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed REXO4 57109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136279971 136279971 + Missense_Mutation SNP C C T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed RUNDC2A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 12136831 12136831 + Missense_Mutation SNP G G T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed SALL1 6299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 51173119 51173119 + Missense_Mutation SNP A A T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed SALL1 6299 broad.mit.edu;ucsc.edu 37 16 51173118 51173118 + Missense_Mutation SNP A C C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed SCOC 60592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 141302257 141302257 + Silent SNP A A G novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed SFSWAP 6433 hgsc.bcm.edu;ucsc.edu 37 12 132211499 132211506 + Frame_Shift_Del DEL TCTGACAA TCTGACAA - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 TCTGACAA TCTGACAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed SLC44A3 126969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 95357883 95357883 + Missense_Mutation SNP A A C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed SLC6A8 6535 broad.mit.edu;hgsc.bcm.edu 37 X 152956789 152956789 + Missense_Mutation SNP T T A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed SP140 11262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 231090582 231090582 + Missense_Mutation SNP G G A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed SSSCA1 10534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65338194 65338194 + Missense_Mutation SNP C C T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed TAC3 6866 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57409489 57409489 + Silent SNP A A T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed TBC1D9B 23061 hgsc.bcm.edu;ucsc.edu 37 5 179299981 179299981 + Frame_Shift_Del DEL T T - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed TBP 6908 broad.mit.edu;hgsc.bcm.edu 37 6 170871067 170871067 + Silent SNP G G A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed TBP 6908 hgsc.bcm.edu 37 6 170871061 170871061 + Silent SNP G G A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed TCHH 7062 hgsc.bcm.edu 37 1 152084175 152084176 + In_Frame_Ins INS - - TGCTGCTCGCGCCTCTCC novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed TRIM55 84675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67047249 67047249 + Silent SNP C C A rs151067178 alternate_allele TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed TRIM62 55223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33612870 33612870 + Missense_Mutation SNP G G A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed TUBGCP6 85378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50657163 50657163 + Missense_Mutation SNP T T C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216166458 216166458 + Missense_Mutation SNP C C A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed VHL 7428 hgsc.bcm.edu 37 3 10183804 10183805 + Frame_Shift_Del DEL CG CG - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01W-1244-10 CG CG CG - CG CG Unknown Valid Somatic Phase_I WXS PacBio . . Illumina MiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 099df9a3-e2e2-4441-b88d-a83da347cbae VSIG8 391123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159827560 159827560 + Silent SNP C C T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed ZBTB33 10009 hgsc.bcm.edu 37 X 119387833 119387834 + In_Frame_Ins INS - - TGA novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed ZNF12 7559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6731954 6731954 + Frame_Shift_Del DEL A A - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed ZNF841 284371 broad.mit.edu;hgsc.bcm.edu 37 19 52568835 52568835 + Missense_Mutation SNP C C T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed ZSWIM6 57688 hgsc.bcm.edu 37 5 60822215 60822215 + Frame_Shift_Del DEL A A - novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed CROCCL1 0 broad.mit.edu 37 1 16946434 16946434 + RNA SNP C T T rs367060 by2hit2allele TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed CTBS 1486 broad.mit.edu 37 1 85039999 85040007 + In_Frame_Del DEL GCAGCGCCA - - rs142534762 bycluster;by1000genomes TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 GCAGCGCCA GCAGCGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed GGT8P 645367 broad.mit.edu 37 2 91968965 91968965 + RNA SNP T G G rs4143481 TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed GOLGA8C 0 broad.mit.edu 37 15 20777925 20777925 + Missense_Mutation SNP G T T novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed KLKB1 3818 broad.mit.edu 37 4 187172722 187172722 + Missense_Mutation SNP T A A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed LIME1 54923 broad.mit.edu 37 20 62370185 62370185 + Missense_Mutation SNP A G G novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed MCC 4163 broad.mit.edu 37 5 112824048 112824049 + In_Frame_Ins INS - GCC GCC novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed P2RY8 286530 broad.mit.edu 37 X 1585028 1585028 + Missense_Mutation SNP C A A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed PABPC1 26986 broad.mit.edu 37 8 101724606 101724606 + Missense_Mutation SNP G A A novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed Unknown 0 broad.mit.edu 37 16 21902089 21902089 + RNA SNP A G G rs771216 bycluster TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed Unknown 0 broad.mit.edu 37 17 39216302 39216303 + Translation_Start_Site INS - G G rs113441706 TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed ZNF208 7757 broad.mit.edu 37 19 22154068 22154068 + Silent SNP T C C novel TCGA-B8-4151-01A-01D-1806-10 TCGA-B8-4151-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3f847558-8bc7-49b0-899d-2a7b8f0e3d1a 41213977-65aa-487a-9d3e-c5cfc7c0ceed