Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID APOB48R 0 hgsc.bcm.edu 37 16 28507398 28507424 + Frame_Shift_Del DEL GGGACAGCCTCAGGAGGGGAGGAGGCC GGGACAGCCTCAGGAGGGGAGGAGGCC - rs148114931 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GGGACAGCCTCAGGAGGGGAGGAGGCC GGGACAGCCTCAGGAGGGGAGGAGGCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 C1orf116 79098 broad.mit.edu;ucsc.edu 37 1 207200938 207200938 + Silent SNP G C C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 C6orf132 647024 hgsc.bcm.edu 37 6 42075105 42075131 + In_Frame_Del DEL GGTGGGGGTTCCAGCAGCAGGGGAGGT GGTGGGGGTTCCAGCAGCAGGGGAGGT - novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GGTGGGGGTTCCAGCAGCAGGGGAGGT GGTGGGGGTTCCAGCAGCAGGGGAGGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 CD28 940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 204591400 204591400 + Missense_Mutation SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 COG5 10466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 106888896 106888896 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DDI1 414301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103908556 103908556 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DEFB115 245929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 29847316 29847316 + Missense_Mutation SNP A A G novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DHX8 1659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41582097 41582097 + Silent SNP G G T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DIO2 1734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 80669284 80669284 + Silent SNP A A G novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DIP2A 23181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47969770 47969770 + Missense_Mutation SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DLX2 1746 hgsc.bcm.edu 37 2 172967128 172967129 + In_Frame_Ins INS - - GCT novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DNAH14 127602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 225288466 225288466 + Silent SNP A A G novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DOCK3 1795 broad.mit.edu;hgsc.bcm.edu 37 3 51246204 51246204 + Splice_Site SNP G G C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56401585 56401585 + Missense_Mutation SNP T T C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 ECHDC2 55268 broad.mit.edu;hgsc.bcm.edu 37 1 53387308 53387308 + Missense_Mutation SNP G G T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 EFS 10278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23826852 23826852 + Silent SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 ENAM 10117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71495256 71495256 + Silent SNP T T G novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 EXOSC9 5393 broad.mit.edu;hgsc.bcm.edu 37 4 122728760 122728760 + Missense_Mutation SNP T T A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 FAM176A 0 hgsc.bcm.edu 37 2 75720569 75720577 + In_Frame_Del DEL GCTGTCGCT GCTGTCGCT - rs148155576 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GCTGTCGCT GCTGTCGCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 FAM19A2 338811 broad.mit.edu;ucsc.edu 37 12 62148719 62148719 + Missense_Mutation SNP C A A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 GALNT13 114805 broad.mit.edu;ucsc.edu 37 2 155115568 155115568 + Missense_Mutation SNP G T T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 GOLGA6L6 727832 hgsc.bcm.edu 37 15 20739938 20739943 + In_Frame_Del DEL CTCCTG CTCCTG - novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 CTCCTG CTCCTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 HLA-C 3107 hgsc.bcm.edu 37 6 31238179 31238179 + Silent SNP C C T rs41562012 byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 KIAA0754 643314 hgsc.bcm.edu 37 1 39879397 39879435 + In_Frame_Del DEL GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC - novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 KIAA1486 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 226378271 226378271 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 KRT2 3849 hgsc.bcm.edu 37 12 53045597 53045597 + Silent SNP A A T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 KRTAP10-6 386674 hgsc.bcm.edu 37 21 46012219 46012220 + In_Frame_Ins INS - - GGGGCGCAGCAGCTG novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 KRTAP1-1 81851 broad.mit.edu;ucsc.edu 37 17 39197549 39197549 + Missense_Mutation SNP G C C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 KRTAP5-2 440021 hgsc.bcm.edu 37 11 1619173 1619202 + In_Frame_Del DEL CCCCCACAGGAGCCACAGCCCCCCTTGGAG CCCCCACAGGAGCCACAGCCCCCCTTGGAG - novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 CCCCCACAGGAGCCACAGCCCCCCTTGGAG CCCCCACAGGAGCCACAGCCCCCCTTGGAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 LRRC8B 23507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 90049487 90049487 + Silent SNP T T C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151860719 151860719 + Nonsense_Mutation SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MMP21 118856 broad.mit.edu;hgsc.bcm.edu 37 10 127461203 127461203 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC21 394263 hgsc.bcm.edu 37 6 30954485 30954485 + Missense_Mutation SNP G G A rs140951082 TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC21 394263 hgsc.bcm.edu 37 6 30955115 30955115 + Missense_Mutation SNP G G A rs52826894 TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC21 394263 hgsc.bcm.edu 37 6 30955140 30955140 + Silent SNP C C T rs143388506 byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195507915 195507915 + Silent SNP T T C rs71635073 bycluster TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195509563 195509563 + Missense_Mutation SNP A A T rs28605870 TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 hgsc.bcm.edu 37 3 195506487 195506534 + In_Frame_Del DEL GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT - novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 hgsc.bcm.edu 37 3 195511993 195511993 + Missense_Mutation SNP A A G rs3107749 TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MYH1 4619 broad.mit.edu;hgsc.bcm.edu 37 17 10419922 10419922 + Missense_Mutation SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 NCOR2 9612 hgsc.bcm.edu 37 12 124887096 124887096 + Silent SNP T T C rs28690647 byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 NEFH 4744 hgsc.bcm.edu 37 22 29885589 29885590 + In_Frame_Ins INS - - CCCCTGAGAAGGCCAAGT novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 NYNRIN 57523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24884470 24884470 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 OR4D5 219875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123810587 123810587 + Silent SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 OR52I2 143502 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4608985 4608985 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 OTOP2 92736 broad.mit.edu;hgsc.bcm.edu 37 17 72920812 72920812 + Missense_Mutation SNP C C G novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52584626 52584626 + Nonsense_Mutation SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 PHF16 9767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 46887437 46887437 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 PKHD1L1 93035 broad.mit.edu;ucsc.edu 37 8 110432841 110432841 + Missense_Mutation SNP G A A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 POSTN 10631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 38162097 38162097 + Silent SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 PRKRA 8575 hgsc.bcm.edu 37 2 179315735 179315736 + Frame_Shift_Del DEL GC GC - rs141354030 by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 RBM14 10432 hgsc.bcm.edu 37 11 66392880 66392880 + Silent SNP C C T rs11550057 bycluster;byfrequency;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 RHPN2 85415 hgsc.bcm.edu 37 19 33471129 33471129 + Nonsense_Mutation SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 RIMBP3 85376 hgsc.bcm.edu 37 22 20460113 20460115 + In_Frame_Del DEL CCG CCG - rs77846076 alternate_allele TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 CCG CCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 RPS21 6227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60963416 60963419 + Frame_Shift_Del DEL TCAA TCAA - novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 TCAA TCAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 S100PBP 64766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33292267 33292267 + Missense_Mutation SNP T T G novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 S1PR4 8698 hgsc.bcm.edu 37 19 3179874 3179874 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 SAAL1 113174 hgsc.bcm.edu 37 11 18127558 18127559 + In_Frame_Ins INS - - CGG novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 SCAF1 58506 hgsc.bcm.edu 37 19 50154294 50154295 + Frame_Shift_Ins INS - - C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 SNTB1 6641 broad.mit.edu;hgsc.bcm.edu 37 8 121823811 121823811 + Silent SNP G G C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 SPTBN5 51332 broad.mit.edu;hgsc.bcm.edu 37 15 42150817 42150817 + Missense_Mutation SNP G G C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 SUCLG1 8802 broad.mit.edu;ucsc.edu 37 2 84652703 84652703 + Missense_Mutation SNP A C C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 TAZ 6901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153649068 153649068 + Missense_Mutation SNP G G T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 TBC1D8B 54885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 106093257 106093257 + Missense_Mutation SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 TGIF2LX 90316 broad.mit.edu;hgsc.bcm.edu 37 X 89177557 89177557 + Missense_Mutation SNP C C A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 TP53BP2 7159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223983623 223983623 + Missense_Mutation SNP G G A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 TRIOBP 11078 hgsc.bcm.edu;ucsc.edu 37 22 38109337 38109337 + Silent SNP C C T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 USP7 7874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 9012898 9012898 + Missense_Mutation SNP T T G novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10191532 10191532 + Nonsense_Mutation SNP C C A rs5030835 alternate_allele TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 VHL 7428 hgsc.bcm.edu 37 3 10183646 10183646 + Missense_Mutation SNP G G A novel TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 94a19895-3cda-423b-a794-6944be76cc68 61b19171-22fd-4ca7-ba5b-fc15b0003fd2 VHL 7428 hgsc.bcm.edu 37 3 10183650 10183650 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 94a19895-3cda-423b-a794-6944be76cc68 61b19171-22fd-4ca7-ba5b-fc15b0003fd2 VHL 7428 hgsc.bcm.edu 37 3 10183653 10183653 + Missense_Mutation SNP A A G novel TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 94a19895-3cda-423b-a794-6944be76cc68 61b19171-22fd-4ca7-ba5b-fc15b0003fd2 VHL 7428 hgsc.bcm.edu 37 3 10183659 10183659 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 C C C T C C Unknown Valid Somatic Phase_I WXS PacBio . . Illumina MiSeq 94a19895-3cda-423b-a794-6944be76cc68 61b19171-22fd-4ca7-ba5b-fc15b0003fd2 VHL 7428 hgsc.bcm.edu 37 3 10183665 10183665 + Missense_Mutation SNP C C T novel TCGA-BP-4164-01A-02W-1382-10 TCGA-BP-4164-11A-01W-1244-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 94a19895-3cda-423b-a794-6944be76cc68 61b19171-22fd-4ca7-ba5b-fc15b0003fd2 AUTS2 26053 broad.mit.edu 37 7 70255256 70255256 + Silent SNP C T T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 CACNA1B 774 broad.mit.edu 37 9 140918171 140918185 + In_Frame_Del DEL GGAGAAGGAGACCAC - - rs145816559 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 GGAGAAGGAGACCAC GGAGAAGGAGACCAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 CACNA2D1 781 broad.mit.edu 37 7 81598283 81598283 + Missense_Mutation SNP C T T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 DSPP 1834 broad.mit.edu 37 4 88536919 88536919 + Silent SNP T C C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 FAM174B 400451 broad.mit.edu 37 15 93198679 93198684 + In_Frame_Del DEL TGGAGC - - rs68056278 bycluster;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 TGGAGC TGGAGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 FAM182A 284800 broad.mit.edu 37 20 26063625 26063625 + RNA SNP T C C rs77830989 bycluster TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 FAM47A 158724 broad.mit.edu 37 X 34148877 34148877 + Missense_Mutation SNP C G G rs5973088 byfrequency;by1000genomes TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 GOLGA6L5 374650 broad.mit.edu 37 15 85053208 85053208 + RNA SNP A C C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 KCND3 3752 broad.mit.edu 37 1 112524688 112524688 + Missense_Mutation SNP G A A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 LTF 4057 broad.mit.edu 37 3 46477692 46477692 + Silent SNP C T T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 broad.mit.edu 37 3 195506983 195506983 + Missense_Mutation SNP G A A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 broad.mit.edu 37 3 195507717 195507717 + Silent SNP G T T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 broad.mit.edu 37 3 195508500 195508500 + Missense_Mutation SNP G C C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 broad.mit.edu 37 3 195511525 195511525 + Missense_Mutation SNP T C C novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 broad.mit.edu 37 3 195511526 195511526 + Missense_Mutation SNP C T T novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 MUC4 4585 broad.mit.edu 37 3 195513826 195513826 + Missense_Mutation SNP G A A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 NBPF10 100132406 broad.mit.edu 37 1 145296448 145296448 + Missense_Mutation SNP T A A rs78828650 byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 NBPF10 100132406 broad.mit.edu 37 1 145323656 145323656 + Missense_Mutation SNP A T T rs75252120 bycluster;byfrequency TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 Unknown 0 broad.mit.edu 37 16 70268121 70268121 + RNA SNP C G G novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 Unknown 0 broad.mit.edu 37 18 109344 109344 + RNA SNP T A A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 Unknown 0 broad.mit.edu 37 18 109348 109348 + RNA SNP G A A novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 Unknown 0 broad.mit.edu 37 5 10437892 10437892 + RNA DEL T - - novel TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79 Unknown 0 broad.mit.edu 37 X 155252868 155252868 + Silent SNP T A A rs1128420 TCGA-BP-4164-01A-02D-1386-10 TCGA-BP-4164-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx feb8c145-040a-40c0-96f6-a2b389073dd9 8eb5b726-ce04-4244-a453-0dfa12704f79