Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ARID5B 84159 hgsc.bcm.edu;ucsc.edu 37 10 63661481 63661481 + Missense_Mutation SNP T T G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 BCL6 604 hgsc.bcm.edu 37 3 187447718 187447718 + Missense_Mutation SNP C C A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 C12orf45 121053 hgsc.bcm.edu 37 12 105380152 105380152 + Missense_Mutation SNP A A C rs1129593 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 C1orf14 0 hgsc.bcm.edu 37 1 182869245 182869245 + Missense_Mutation SNP C C G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 C1orf173 127254 hgsc.bcm.edu 37 1 75102070 75102070 + Missense_Mutation SNP A A G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 CARD10 29775 hgsc.bcm.edu 37 22 37891824 37891824 + Missense_Mutation SNP C C A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 CDH22 64405 hgsc.bcm.edu 37 20 44869833 44869833 + Missense_Mutation SNP C C A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 CENPE 1062 hgsc.bcm.edu 37 4 104115562 104115562 + Missense_Mutation SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 CHD9 80205 hgsc.bcm.edu 37 16 53358033 53358033 + Silent SNP G G A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 CHRM5 1133 hgsc.bcm.edu;ucsc.edu 37 15 34356453 34356453 + Missense_Mutation SNP G G A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 CLSTN2 64084 hgsc.bcm.edu 37 3 140140114 140140114 + Missense_Mutation SNP A A G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 COL9A2 1298 hgsc.bcm.edu;ucsc.edu 37 1 40776390 40776390 + Missense_Mutation SNP G G A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 CSF2RB 1439 hgsc.bcm.edu 37 22 37334375 37334375 + Missense_Mutation SNP C C T rs147019788 TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 DNAH10 196385 hgsc.bcm.edu;ucsc.edu 37 12 124416606 124416606 + Missense_Mutation SNP G G C novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 F7 2155 hgsc.bcm.edu 37 13 113769996 113769996 + Nonsense_Mutation SNP T T A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 FAM178A 55719 hgsc.bcm.edu 37 10 102676494 102676494 + Missense_Mutation SNP G G C novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 FAT1 2195 hgsc.bcm.edu 37 4 187630234 187630234 + Missense_Mutation SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 FMR1 2332 hgsc.bcm.edu;ucsc.edu 37 X 147030317 147030317 + Missense_Mutation SNP C C A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 GLT8D2 83468 hgsc.bcm.edu 37 12 104387250 104387250 + Missense_Mutation SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 KLHDC8B 200942 hgsc.bcm.edu 37 3 49210262 49210262 + Silent SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 KSR1 8844 hgsc.bcm.edu;ucsc.edu 37 17 25919598 25919598 + Silent SNP G G T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 LALBA 3906 hgsc.bcm.edu;ucsc.edu 37 12 48961740 48961740 + Missense_Mutation SNP T T C novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 LASS3 0 hgsc.bcm.edu;ucsc.edu 37 15 101031104 101031104 + Missense_Mutation SNP C C G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 LUM 4060 hgsc.bcm.edu 37 12 91502421 91502421 + Silent SNP G G A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 MALT1 10892 hgsc.bcm.edu;ucsc.edu 37 18 56414818 56414818 + Missense_Mutation SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 MAPK4 5596 hgsc.bcm.edu 37 18 48190484 48190484 + Silent SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 MEN1 4221 hgsc.bcm.edu;ucsc.edu 37 11 64577153 64577153 + Silent SNP G G A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 MICAL2 9645 hgsc.bcm.edu;ucsc.edu 37 11 12225972 12225972 + Missense_Mutation SNP G G T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 MUC6 4588 hgsc.bcm.edu 37 11 1017069 1017069 + Missense_Mutation SNP G G A rs80333708 bycluster;byfrequency TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 MYT1L 23040 hgsc.bcm.edu;ucsc.edu 37 2 1921063 1921063 + Missense_Mutation SNP C C A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 NDUFV2 4729 hgsc.bcm.edu 37 18 9117867 9117867 + Missense_Mutation SNP T T C rs906807 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 NETO2 81831 hgsc.bcm.edu;ucsc.edu 37 16 47165915 47165915 + Missense_Mutation SNP A A G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 NEURL4 84461 hgsc.bcm.edu;ucsc.edu 37 17 7224890 7224890 + Missense_Mutation SNP C C G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 OBSCN 84033 hgsc.bcm.edu;ucsc.edu 37 1 228511298 228511298 + Missense_Mutation SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 OR10G3 26533 hgsc.bcm.edu 37 14 22038054 22038054 + Silent SNP G G A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 PER2 8864 hgsc.bcm.edu;ucsc.edu 37 2 239185783 239185783 + Silent SNP T T C novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 PLEKHA6 22874 hgsc.bcm.edu;ucsc.edu 37 1 204228767 204228767 + Missense_Mutation SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 PRKCD 5580 hgsc.bcm.edu 37 3 53223226 53223226 + Silent SNP C C A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 SCAPER 49855 hgsc.bcm.edu;ucsc.edu 37 15 77096926 77096926 + Missense_Mutation SNP T T C novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 SCN2A 6326 hgsc.bcm.edu;ucsc.edu 37 2 166152464 166152464 + Missense_Mutation SNP A A G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 SETX 23064 hgsc.bcm.edu;ucsc.edu 37 9 135202859 135202859 + Missense_Mutation SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 SFPQ 6421 hgsc.bcm.edu;ucsc.edu 37 1 35657116 35657116 + Missense_Mutation SNP A A T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 SLC17A1 6568 hgsc.bcm.edu 37 6 25813151 25813151 + Missense_Mutation SNP T T C novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 SLC6A20 54716 hgsc.bcm.edu;ucsc.edu 37 3 45817396 45817396 + Missense_Mutation SNP A A G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 SREK1IP1 285672 hgsc.bcm.edu 37 5 64020316 64020316 + Missense_Mutation SNP T T G rs80170948 bycluster;byfrequency;by1000genomes TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 STARD9 57519 hgsc.bcm.edu 37 15 42961446 42961446 + Missense_Mutation SNP G G A novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 TBC1D13 54662 hgsc.bcm.edu 37 9 131570110 131570110 + Silent SNP T T C novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 TBC1D2 55357 hgsc.bcm.edu;ucsc.edu 37 9 100991264 100991264 + Silent SNP C C T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 TGFBR2 7048 hgsc.bcm.edu 37 3 30732950 30732950 + Missense_Mutation SNP G G T novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 VEZT 55591 hgsc.bcm.edu;ucsc.edu 37 12 95668544 95668544 + Missense_Mutation SNP A A G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7 VPS13A 23230 hgsc.bcm.edu 37 9 79933403 79933403 + Missense_Mutation SNP A A G novel TCGA-BP-4169-01A-02D-1366-10 TCGA-BP-4169-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID c5132145-355e-49d3-b6cd-2a8ba2daaa39 658defa0-ce93-475f-978e-9494b4b619d7