Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAD2 161931 hgsc.bcm.edu 37 16 84227694 84227694 + Missense_Mutation SNP C C A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 ARHGAP31 57514 hgsc.bcm.edu 37 3 119133102 119133102 + Missense_Mutation SNP A A C novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 ATRN 8455 hgsc.bcm.edu 37 20 3627468 3627468 + Missense_Mutation SNP C C A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 C10orf12 26148 hgsc.bcm.edu;ucsc.edu 37 10 98741230 98741230 + Missense_Mutation SNP T T A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 CACNA1G 8913 hgsc.bcm.edu 37 17 48699064 48699064 + Missense_Mutation SNP T T C novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 CDKL3 51265 hgsc.bcm.edu;ucsc.edu 37 5 133655130 133655130 + Silent SNP T T C novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 CHRNA2 1135 hgsc.bcm.edu;ucsc.edu 37 8 27319259 27319259 + Missense_Mutation SNP A A G novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 COPA 1314 hgsc.bcm.edu;ucsc.edu 37 1 160261203 160261203 + Missense_Mutation SNP C C A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 DAB2 1601 hgsc.bcm.edu;ucsc.edu 37 5 39381655 39381655 + Nonsense_Mutation SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 DHX34 9704 hgsc.bcm.edu 37 19 47856609 47856609 + Missense_Mutation SNP C C T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 DIP2A 23181 hgsc.bcm.edu 37 21 47987406 47987406 + Silent SNP G G T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 DLL4 54567 hgsc.bcm.edu 37 15 41228880 41228880 + Silent SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 EBLN2 55096 hgsc.bcm.edu;ucsc.edu 37 3 73111546 73111546 + Missense_Mutation SNP A A G novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 ENDOD1 23052 hgsc.bcm.edu;ucsc.edu 37 11 94862593 94862593 + Silent SNP T T G novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 EPS15L1 58513 hgsc.bcm.edu;ucsc.edu 37 19 16552710 16552710 + Missense_Mutation SNP A A C novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 ERCC8 1161 hgsc.bcm.edu;ucsc.edu 37 5 60183307 60183307 + Nonsense_Mutation SNP C C T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 FEZ2 9637 hgsc.bcm.edu 37 2 36785599 36785599 + Missense_Mutation SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 GPR149 344758 hgsc.bcm.edu 37 3 154146465 154146465 + Missense_Mutation SNP T T C novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 GTSF1L 149699 hgsc.bcm.edu;ucsc.edu 37 20 42355035 42355035 + Silent SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 HLA-DQB1 3119 hgsc.bcm.edu 37 6 32634331 32634331 + Silent SNP G G A rs1049058 bycluster;by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 HLA-DQB1 3119 hgsc.bcm.edu 37 6 32634350 32634350 + Missense_Mutation SNP T T C rs76331164 TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 JMJD1C 221037 hgsc.bcm.edu 37 10 64975354 64975354 + Nonsense_Mutation SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 LAMA3 3909 hgsc.bcm.edu;ucsc.edu 37 18 21422710 21422710 + Missense_Mutation SNP T T G novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 LIX1L 128077 hgsc.bcm.edu 37 1 145497422 145497422 + Missense_Mutation SNP T T A rs189730184 by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 MEPE 56955 hgsc.bcm.edu;ucsc.edu 37 4 88755919 88755919 + Missense_Mutation SNP C C G novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 MICALL2 79778 hgsc.bcm.edu 37 7 1480280 1480280 + Silent SNP C C T rs58636013 bycluster;byfrequency;by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 MICALL2 79778 hgsc.bcm.edu 37 7 1480286 1480286 + Silent SNP G G A rs61741872 bycluster;byfrequency;by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 MSH5 4439 hgsc.bcm.edu 37 6 31729359 31729359 + Silent SNP A A G rs80093443 bycluster TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 MYH11 4629 hgsc.bcm.edu;ucsc.edu 37 16 15931906 15931906 + Missense_Mutation SNP C C A rs111777997 alternate_allele TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 MYOM2 9172 hgsc.bcm.edu;ucsc.edu 37 8 2033423 2033423 + Silent SNP C C T rs144162836 byfrequency TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 NDFIP1 80762 hgsc.bcm.edu 37 5 141517333 141517333 + Silent SNP G G T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 NR2F2 7026 hgsc.bcm.edu;ucsc.edu 37 15 96880591 96880591 + Missense_Mutation SNP T T C novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 ODF1 4956 hgsc.bcm.edu 37 8 103573037 103573037 + Silent SNP G G C rs62523273 bycluster;byfrequency TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 OR14I1 401994 hgsc.bcm.edu;ucsc.edu 37 1 248845202 248845202 + Missense_Mutation SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 OR1L8 138881 hgsc.bcm.edu;ucsc.edu 37 9 125330260 125330260 + Missense_Mutation SNP C C T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 PRAMEF12 390999 hgsc.bcm.edu 37 1 12837331 12837331 + Missense_Mutation SNP G G T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 PRAMEF12 390999 hgsc.bcm.edu 37 1 12837652 12837652 + Silent SNP C C T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 PRAMEF12 390999 hgsc.bcm.edu 37 1 12837664 12837664 + Silent SNP C C T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 PRAMEF12 390999 hgsc.bcm.edu 37 1 12837669 12837669 + Missense_Mutation SNP G G T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 PTCH1 5727 hgsc.bcm.edu 37 9 98211564 98211564 + Silent SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 RPH3A 22895 hgsc.bcm.edu;ucsc.edu 37 12 113304584 113304584 + Missense_Mutation SNP T T A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 SH3KBP1 30011 hgsc.bcm.edu;ucsc.edu 37 X 19587268 19587268 + Missense_Mutation SNP A A T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 SHPK 23729 hgsc.bcm.edu;ucsc.edu 37 17 3518702 3518702 + Missense_Mutation SNP G G T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 SLC38A2 54407 hgsc.bcm.edu;ucsc.edu 37 12 46760866 46760866 + Silent SNP G G A rs36022751 bycluster;byfrequency;by1000genomes TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 SMG6 23293 hgsc.bcm.edu 37 17 2203323 2203323 + Missense_Mutation SNP T T C novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 STIP1 10963 hgsc.bcm.edu 37 11 63965325 63965325 + Splice_Site SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 TRIM28 10155 hgsc.bcm.edu 37 19 59060881 59060881 + Missense_Mutation SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 TTC29 83894 hgsc.bcm.edu 37 4 147724797 147724797 + Missense_Mutation SNP A A C novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 TUBA3C 7278 hgsc.bcm.edu 37 13 19751274 19751274 + Silent SNP G G A rs143115179 byfrequency TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 VCP 7415 hgsc.bcm.edu 37 9 35061687 35061687 + Splice_Site SNP C C G novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 ZNF133 7692 hgsc.bcm.edu 37 20 18297069 18297069 + Missense_Mutation SNP G G A novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 ZNF613 79898 hgsc.bcm.edu 37 19 52448101 52448101 + Missense_Mutation SNP G G T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1 ZNF786 136051 hgsc.bcm.edu 37 7 148768360 148768360 + Silent SNP G G T novel TCGA-BP-4330-01A-01D-1366-10 TCGA-BP-4330-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 601fd47a-12f9-413d-8c06-cf1f23c406cb 8e83a5db-7371-4374-838d-9c4329dd73e1