Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID C13orf18 0 broad.mit.edu;hgsc.bcm.edu 37 13 46935677 46935677 + Missense_Mutation SNP C C G novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 CHD4 1108 hgsc.bcm.edu 37 12 6711145 6711147 + In_Frame_Del DEL TCC TCC - novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 TCC TCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 CHIA 27159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111860638 111860638 + Silent SNP C C T rs148384495 byfrequency TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 CKAP5 9793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46782199 46782199 + Missense_Mutation SNP G G A novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238249678 238249678 + Silent SNP A A C novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 DDI1 414301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103908554 103908554 + Missense_Mutation SNP T T C novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 90025457 90025457 + Splice_Site SNP A A C novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 H2AFJ 55766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14927791 14927791 + Missense_Mutation SNP A A T novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 HAGH 3029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1866933 1866933 + Silent SNP G G A novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 KIF13A 63971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17828563 17828563 + Missense_Mutation SNP G G C novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 MACF1 23499 hgsc.bcm.edu;ucsc.edu 37 1 39781186 39781194 + In_Frame_Del DEL ACACCCAGG ACACCCAGG - novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 ACACCCAGG ACACCCAGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 NOX3 50508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155776182 155776182 + Nonsense_Mutation SNP G G A rs143358981 byfrequency TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 ODF2 4957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131256884 131256884 + Silent SNP A A G novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 P2RX3 5024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57118271 57118271 + Silent SNP C C T novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52621433 52621434 + Frame_Shift_Del DEL CT CT - novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 CT CT CT - CT CT Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 PCSK6 5046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101933619 101933619 + Frame_Shift_Del DEL C C - novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 PLEKHG4 25894 broad.mit.edu;hgsc.bcm.edu 37 16 67318759 67318759 + Silent SNP G G A novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 SKIV2L 6499 broad.mit.edu;hgsc.bcm.edu 37 6 31932019 31932019 + Missense_Mutation SNP T T C novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 TEKT4 150483 hgsc.bcm.edu 37 2 95539855 95539855 + Splice_Site SNP T T G novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 VWA5A 4013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123995002 123995002 + Missense_Mutation SNP G G A novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 ZFYVE28 57732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2306052 2306052 + Missense_Mutation SNP G G A rs117669252 bycluster;byfrequency;by1000genomes TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 ACTR3C 653857 broad.mit.edu 37 7 149990455 149990455 + Silent SNP T C C rs2689611 TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 C21orf99 0 broad.mit.edu 37 21 14417489 14417489 + RNA SNP C G G novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 C7orf27 0 broad.mit.edu 37 7 2577862 2577862 + Silent SNP A G G novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 KCNJ10 3766 broad.mit.edu 37 1 160011200 160011200 + Missense_Mutation SNP G A A novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 LOC285359 0 broad.mit.edu 37 3 101431291 101431291 + RNA SNP C T T novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 MST1P2 11209 broad.mit.edu 37 1 16974745 16974745 + RNA SNP G A A rs78283833 byfrequency TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9 VHL 7428 broad.mit.edu 37 3 10183752 10183752 + Missense_Mutation SNP T A A rs5030803 alternate_allele TCGA-BP-4975-01A-01D-1462-08 TCGA-BP-4975-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 109d2752-17f8-4b00-a61f-dfd8e2e3ca81 412ed2d9-14aa-4f99-8fb3-91713e0e43c9