Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ATAD3A 55210 broad.mit.edu;ucsc.edu 37 1 1459280 1459280 + Missense_Mutation SNP G A A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 BRD2 6046 broad.mit.edu;hgsc.bcm.edu 37 6 32943251 32943251 + Missense_Mutation SNP A A G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 CAD 790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27457500 27457500 + Missense_Mutation SNP G G A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 CHUK 1147 hgsc.bcm.edu;ucsc.edu 37 10 101961883 101961883 + Frame_Shift_Del DEL A A - novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 DEGS1 8560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 224377767 224377767 + Missense_Mutation SNP G G A rs188450448 by1000genomes TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 ENAM 10117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71510239 71510239 + Silent SNP C C A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 EPHA5 2044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 66213782 66213782 + Missense_Mutation SNP G G C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 EPS15L1 58513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16536069 16536069 + Missense_Mutation SNP G G A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 F11 2160 broad.mit.edu;hgsc.bcm.edu 37 4 187208887 187208887 + Silent SNP C C T novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 FREM2 341640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39451280 39451280 + Silent SNP T T C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 IL2RA 3559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6054846 6054846 + Silent SNP T T G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 ITIH5 80760 hgsc.bcm.edu 37 10 7608335 7608336 + Frame_Shift_Ins INS - - G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 KIAA1009 22832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 84894950 84894950 + Missense_Mutation SNP T T C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 KLHDC7A 127707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 18807868 18807868 + Silent SNP G G A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 MGA 23269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42035185 42035185 + Missense_Mutation SNP C C G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 MYO1E 4643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59506883 59506883 + Missense_Mutation SNP A A G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 NCF2 4688 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183532672 183532672 + Nonsense_Mutation SNP T T A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 NDUFA4L2 56901 hgsc.bcm.edu 37 12 57630850 57630860 + Frame_Shift_Del DEL CAAGACTGGCT CAAGACTGGCT - novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 CAAGACTGGCT CAAGACTGGCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 NF2 4771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30032866 30032867 + Frame_Shift_Del DEL GT GT - novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 GT GT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 NGRN 51335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90815014 90815014 + Silent SNP A A G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 NGRN 51335 hgsc.bcm.edu;ucsc.edu 37 15 90815002 90815005 + Frame_Shift_Del DEL CTTC CTTC - novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 CTTC CTTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 NKAPL 222698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28227271 28227271 + Missense_Mutation SNP C C T novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 OR2T10 127069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 248756885 248756885 + Missense_Mutation SNP A A C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 PAIP1 10605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43555964 43555964 + Missense_Mutation SNP A A T novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 PCDHA9 9752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140230078 140230078 + Silent SNP G G A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 PIGC 5279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 172411549 172411549 + Missense_Mutation SNP A A T novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 PLEC 5339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145007369 145007369 + Missense_Mutation SNP G G A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 PNPLA8 50640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 108155092 108155092 + Missense_Mutation SNP A A C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 POLD1 5424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50905747 50905747 + Nonsense_Mutation SNP G G A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 PRKCE 5581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 45879259 45879259 + Missense_Mutation SNP T T A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 RYR1 6261 broad.mit.edu;hgsc.bcm.edu 37 19 39008218 39008218 + Missense_Mutation SNP C C A rs139289204 TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38985048 38985048 + Missense_Mutation SNP G G A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 SLC25A2 83884 broad.mit.edu;ucsc.edu 37 5 140682821 140682821 + Missense_Mutation SNP T G G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 STEAP3 55240 hgsc.bcm.edu 37 2 120003082 120003090 + In_Frame_Del DEL GAGATGGAC GAGATGGAC - novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 GAGATGGAC GAGATGGAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 TBC1D16 125058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 77926601 77926601 + Missense_Mutation SNP C C G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179664360 179664360 + Silent SNP C C T novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 USH2A 7399 hgsc.bcm.edu 37 1 215813937 215813938 + Frame_Shift_Ins INS - - A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 VHL 7428 hgsc.bcm.edu 37 3 10188262 10188262 + Missense_Mutation SNP A A T rs119103278 alternate_allele TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 VPS54 51542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 64160992 64160992 + Missense_Mutation SNP T T C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 ZNF234 10780 broad.mit.edu;ucsc.edu 37 19 44660625 44660625 + Missense_Mutation SNP G C C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 ZNF473 25888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50549932 50549932 + Missense_Mutation SNP G G C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 ATP4A 495 broad.mit.edu 37 19 36046428 36046428 + Missense_Mutation SNP C G G novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 B4GALNT4 338707 broad.mit.edu 37 11 379656 379656 + Missense_Mutation SNP C T T novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 KCNJ12 3768 broad.mit.edu 37 17 21319528 21319528 + Missense_Mutation SNP G A A novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 PROCR 10544 broad.mit.edu 37 20 33762727 33762727 + Missense_Mutation SNP G T T novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 SPNS3 201305 broad.mit.edu 37 17 4381896 4381896 + Silent SNP G C C novel TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853 Unknown 0 broad.mit.edu 37 X 228267 228267 + Translation_Start_Site SNP G A A rs188588834 by1000genomes TCGA-BP-4986-01A-01D-1462-08 TCGA-BP-4986-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4465171a-d048-4078-b1ae-021b2c635ff4 2ed78cfb-2ff0-4682-9c25-21174a4e4853