Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AKR1B15 441282 broad.mit.edu;hgsc.bcm.edu 37 7 134254201 134254201 + Missense_Mutation SNP A A C novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 C10orf118 55088 broad.mit.edu;hgsc.bcm.edu 37 10 115885644 115885644 + Splice_Site SNP C C A novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 C19orf26 255057 broad.mit.edu;hgsc.bcm.edu 37 19 1234610 1234610 + Missense_Mutation SNP T T C novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 DAGLA 747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61495757 61495757 + Missense_Mutation SNP G G A novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 DDX31 64794 hgsc.bcm.edu 37 9 135545604 135545607 + Frame_Shift_Del DEL TGAA TGAA - novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 TGAA TGAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 DOLPP1 57171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131851258 131851258 + Missense_Mutation SNP A A C novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 DOT1L 84444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2223398 2223398 + Missense_Mutation SNP G G A novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 FAM179B 23116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 45537687 45537687 + Silent SNP C C T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 FOXD4L4 349334 hgsc.bcm.edu 37 9 42719309 42719311 + In_Frame_Del DEL GCT GCT - novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 GCT GCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 GPC5 2262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 92345764 92345764 + Missense_Mutation SNP A A T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 GPN2 54707 broad.mit.edu;hgsc.bcm.edu 37 1 27216524 27216524 + Missense_Mutation SNP T T C novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 HAPLN1 1404 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 82948369 82948369 + Silent SNP G G T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 HLA-A 3105 hgsc.bcm.edu 37 6 29911271 29911271 + Missense_Mutation SNP G G C rs74914698 TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 HOXC8 3224 broad.mit.edu;ucsc.edu 37 12 54403161 54403161 + Missense_Mutation SNP C A A novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 IFIT3 3437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91099779 91099779 + Frame_Shift_Del DEL T T - novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 IFT140 9742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1639724 1639724 + Missense_Mutation SNP C C T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 KIF19 124602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72340956 72340956 + Silent SNP C C A novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 LMAN1 3998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 57026429 57026429 + Silent SNP C C T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 MS4A12 54860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60265014 60265014 + Missense_Mutation SNP C C G rs146116909 TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 MYSM1 114803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 59125681 59125681 + Missense_Mutation SNP T T A novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 PARD6B 84612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49366663 49366664 + Frame_Shift_Del DEL AA AA - novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 AA AA AA - AA AA Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 PIF1 80119 hgsc.bcm.edu 37 15 65114501 65114502 + Frame_Shift_Ins INS - - G novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 RUFY2 55680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70140991 70140991 + Nonsense_Mutation SNP G G A novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33066569 33066569 + Missense_Mutation SNP C C T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 SLC17A4 10050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25770630 25770630 + Missense_Mutation SNP C C G novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 SUPT7L 9913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27880496 27880497 + Frame_Shift_Del DEL AG AG - novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 VEZT 55591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95645766 95645766 + Missense_Mutation SNP A A T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 WDR72 256764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 53908347 53908347 + Missense_Mutation SNP G G C novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 WDR73 84942 hgsc.bcm.edu 37 15 85186877 85186894 + In_Frame_Del DEL CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT - rs11267906 bycluster;by1000genomes TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 ZNF100 163227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 21909595 21909595 + Missense_Mutation SNP G G T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 ZSCAN16 80345 hgsc.bcm.edu;ucsc.edu 37 6 28093441 28093441 + Frame_Shift_Del DEL T T - novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 GOLGA6L5 374650 broad.mit.edu 37 15 85056021 85056021 + RNA SNP T C C rs1062001 TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 IGSF21 84966 broad.mit.edu 37 1 18688657 18688657 + Missense_Mutation SNP T C C novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 NCF1C 654817 broad.mit.edu 37 7 74573755 74573755 + Nonsense_Mutation SNP G T T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 POLDIP2 26073 broad.mit.edu 37 17 26684390 26684391 + Splice_Site INS - C C rs11448856 bycluster;by1000genomes TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 RECQL5 9400 broad.mit.edu 37 17 73626918 73626919 + Splice_Site INS - TG TG novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 TBC1D10B 26000 broad.mit.edu 37 16 30380671 30380671 + Silent SNP C T T novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4 MTOR 2475 broad.mit.edu 37 1 11217230 11217230 + Missense_Mutation SNP C A A novel TCGA-BP-5007-01A-01D-1462-08 TCGA-BP-5007-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 830e29e4-acf5-4247-b2d4-c19ad859820f 42a08dce-9507-40d4-80f8-9b0f18ddd0c4