Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA1 19 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 107564349 107564349 + Missense_Mutation SNP G G T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 ACSM3 6296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20796410 20796410 + Missense_Mutation SNP G G T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 ADAMTS2 9509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178579193 178579193 + Missense_Mutation SNP T T G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 AIM1L 55057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26663759 26663759 + Silent SNP G G A novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 BTAF1 9044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93695500 93695500 + Missense_Mutation SNP A A T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 C12orf10 60314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53700821 53700821 + Missense_Mutation SNP G G A novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 C12orf10 60314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53700822 53700822 + Nonsense_Mutation SNP C C A novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 CD3EAP 10849 hgsc.bcm.edu 37 19 45912490 45912492 + In_Frame_Del DEL AAG AAG - rs145007633 bycluster;by1000genomes TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 AAG AAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 CELSR1 9620 hgsc.bcm.edu;ucsc.edu 37 22 46930036 46930036 + Frame_Shift_Del DEL T T - novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 CLCN5 1184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 49840554 49840554 + Missense_Mutation SNP A A G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 CS 1431 broad.mit.edu;hgsc.bcm.edu 37 12 56669791 56669791 + Silent SNP G G A rs146737473 TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 DAPK3 1613 hgsc.bcm.edu 37 19 3964978 3964984 + Frame_Shift_Del DEL GCAAACT GCAAACT - novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 GCAAACT GCAAACT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 DBI 1622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 120129819 120129819 + Splice_Site SNP A A T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 DHX35 60625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37632409 37632409 + Silent SNP T T A novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 DIAPH3 81624 broad.mit.edu;hgsc.bcm.edu 37 13 60584726 60584726 + Missense_Mutation SNP A A T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196837108 196837108 + Missense_Mutation SNP A A C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 FAT4 79633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 126389800 126389800 + Missense_Mutation SNP G G C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 FAT4 79633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 126389801 126389801 + Missense_Mutation SNP C C A novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 FBXO38 81545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147781573 147781573 + Silent SNP A A G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 HAGH 3029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1866929 1866929 + Missense_Mutation SNP T T C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 HECW1 23072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 43400541 43400541 + Missense_Mutation SNP A A T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 IFNA5 3442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 21304871 21304871 + Missense_Mutation SNP C C G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 LCE1F 353137 hgsc.bcm.edu 37 1 152749037 152749042 + In_Frame_Del DEL GGTGGT GGTGGT - rs149277953 by1000genomes TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 GGTGGT GGTGGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 LCP1 3936 hgsc.bcm.edu 37 13 46717458 46717459 + Frame_Shift_Ins INS - - G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 LOXL4 84171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 100015482 100015482 + Missense_Mutation SNP C C G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 NOXO1 124056 hgsc.bcm.edu 37 16 2031172 2031173 + Frame_Shift_Ins INS - - C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 PLEKHG1 57480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 151153138 151153138 + Missense_Mutation SNP T T C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 PLEKHH2 130271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43924441 43924441 + Missense_Mutation SNP A A C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36133906 36133906 + Missense_Mutation SNP A A G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 RASSF6 166824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 74459276 74459276 + Missense_Mutation SNP A A C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 ROCK2 9475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11361380 11361380 + Silent SNP T T C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 RPL30 6156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 99054939 99054939 + Missense_Mutation SNP T T C novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 SCAND3 114821 broad.mit.edu;ucsc.edu 37 6 28542935 28542935 + Missense_Mutation SNP T A A novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 SLC29A3 55315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73111405 73111405 + Missense_Mutation SNP C C G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 SLCO1B1 10599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21353532 21353532 + Missense_Mutation SNP G G A novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 C1orf198 84886 broad.mit.edu 37 1 230979640 230979640 + Missense_Mutation SNP A T T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 CECR2 27443 broad.mit.edu 37 22 18021869 18021869 + Silent SNP C T T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 FAM108A1 81926 broad.mit.edu 37 19 1881411 1881411 + Missense_Mutation SNP G T T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 KLF8 11279 broad.mit.edu 37 X 56291625 56291625 + Missense_Mutation SNP G T T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 LOC441666 441666 broad.mit.edu 37 10 42832499 42832499 + RNA SNP C G G novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 PRODH2 58510 broad.mit.edu 37 19 36304176 36304176 + Missense_Mutation SNP G T T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 SSPO 23145 broad.mit.edu 37 7 149515189 149515189 + Splice_Site DEL A - - rs112122477 TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 ZNF862 643641 broad.mit.edu 37 7 149544912 149544912 + Silent SNP C A A novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0 MYST4 0 broad.mit.edu 37 10 76789332 76789332 + Missense_Mutation SNP A T T novel TCGA-BP-5008-01A-01D-1462-08 TCGA-BP-5008-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx a945d50e-a61d-46e3-ade6-c295a5ecf54a d5e54023-831c-486a-9e5a-57dd34c6ebb0