Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AGAP1 116987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 236706509 236706509 + Silent SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ANKRD12 23253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 9256041 9256042 + Frame_Shift_Del DEL AA AA - novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a APBA2 321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 29400578 29400578 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a AQPEP 206338 broad.mit.edu;ucsc.edu 37 5 115298600 115298600 + Missense_Mutation SNP C G G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ARFIP1 27236 hgsc.bcm.edu;ucsc.edu 37 4 153831304 153831304 + Frame_Shift_Del DEL T T - novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ARHGAP20 57569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 110451607 110451607 + Missense_Mutation SNP G G T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ARMC4 55130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 28270411 28270411 + Missense_Mutation SNP T T G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ATR 545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142184019 142184019 + Missense_Mutation SNP A A T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A A T A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ATXN7L2 127002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110031529 110031529 + Missense_Mutation SNP G G C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a AVIL 10677 broad.mit.edu;hgsc.bcm.edu 37 12 58207208 58207208 + Splice_Site SNP T T C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CABIN1 23523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24463082 24463082 + Missense_Mutation SNP G G C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CALU 813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128407619 128407619 + Missense_Mutation SNP G G T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CDK8 1024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26923220 26923220 + Silent SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CDYL 9425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 4892566 4892566 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CHI3L1 1116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203148901 203148901 + Missense_Mutation SNP G G C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CKAP2 26586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 53035798 53035798 + Silent SNP A A T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CLDN14 23562 hgsc.bcm.edu;ucsc.edu 37 21 37833694 37833694 + Silent SNP G G A rs113350364 bycluster;byfrequency;by1000genomes TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58594198 58594198 + Missense_Mutation SNP T T G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a CPA4 51200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129938646 129938646 + Silent SNP A A T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a DAAM1 23002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59834206 59834206 + Missense_Mutation SNP C C A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a DDX54 79039 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113618759 113618759 + Silent SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a DDX58 23586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32488009 32488009 + Silent SNP C C T rs151092988 TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a DENND4A 10260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65959941 65959942 + Frame_Shift_Del DEL TC TC - novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a DNHD1 144132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6519865 6519865 + Missense_Mutation SNP G G C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a EIF4ENIF1 56478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31850208 31850208 + Silent SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a EPHA8 2046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22920016 22920016 + Splice_Site SNP G G C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a EXOC7 23265 broad.mit.edu;hgsc.bcm.edu 37 17 74077512 74077512 + RNA SNP A A G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a FAM71C 196472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100042363 100042363 + Missense_Mutation SNP G G T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a FBN3 84467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8175825 8175825 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a FEM1C 56929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 114878826 114878826 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152286259 152286260 + Frame_Shift_Del DEL TG TG - novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 TG TG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a FLG 2312 hgsc.bcm.edu 37 1 152286260 152286260 + Missense_Mutation SNP G G C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a FOXR1 283150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118849549 118849549 + Missense_Mutation SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a FOXR1 283150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118849551 118849551 + Missense_Mutation SNP A A T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a FSCN1 6624 broad.mit.edu;hgsc.bcm.edu 37 7 5632742 5632742 + Missense_Mutation SNP G G C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a GAL3ST1 9514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30952062 30952062 + Frame_Shift_Del DEL C C - novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a GBF1 8729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104111114 104111114 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a GP6 51206 hgsc.bcm.edu 37 19 55526103 55526104 + Frame_Shift_Ins INS - - CAGA rs113550298 TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a HIVEP1 3096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 12164030 12164030 + Missense_Mutation SNP T T C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a INSL6 11172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5185530 5185530 + Missense_Mutation SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ITIH4 3700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52854657 52854657 + Frame_Shift_Del DEL G G - novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a KBTBD6 89890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41704758 41704758 + Silent SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a KIAA1468 57614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 59949659 59949659 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a KLRC2 3822 broad.mit.edu;hgsc.bcm.edu 37 12 10584769 10584769 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a KRTAP4-12 83755 broad.mit.edu;hgsc.bcm.edu 37 17 39279933 39279933 + Missense_Mutation SNP A A T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a LRP11 84918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150164137 150164137 + Missense_Mutation SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a LRP11 84918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150164138 150164138 + Silent SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141643767 141643767 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a MAML1 9794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179193074 179193074 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a MED13 9969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60038959 60038959 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a MED18 54797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28661113 28661113 + Missense_Mutation SNP T T A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a MYCN 4613 broad.mit.edu;hgsc.bcm.edu 37 2 16085629 16085629 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a MYO7A 4647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 76893001 76893001 + Missense_Mutation SNP T T G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a NAF1 92345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 164050071 164050071 + Missense_Mutation SNP G G T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a NLRP12 91662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54313706 54313706 + Missense_Mutation SNP C C A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a NLRP12 91662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54313711 54313711 + Missense_Mutation SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a NPHP3 27031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132419270 132419270 + Missense_Mutation SNP A A G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a NUP160 23279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47833875 47833875 + Frame_Shift_Del DEL T T - novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a OR51Q1 390061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5443672 5443672 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a PCDHAC2 56134 broad.mit.edu;ucsc.edu 37 5 140346845 140346845 + Missense_Mutation SNP C A A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a PCDHGB7 56099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140798869 140798869 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a PCDHGC5 56097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140870296 140870296 + Nonsense_Mutation SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82544733 82544733 + Missense_Mutation SNP T T C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a PGPEP1L 145814 broad.mit.edu;hgsc.bcm.edu 37 15 99511854 99511854 + Silent SNP A A T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a PKP4 8502 broad.mit.edu;hgsc.bcm.edu 37 2 159499107 159499107 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a PKP4 8502 hgsc.bcm.edu;ucsc.edu 37 2 159499100 159499101 + In_Frame_Ins INS - - GCAAGT novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a PPM1B 5495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44428909 44428909 + Missense_Mutation SNP C C A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a QSOX2 169714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139118696 139118696 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a RTF1 23168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41762545 41762545 + Missense_Mutation SNP A A G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a SCD5 79966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83719576 83719576 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a SNAI3 333929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88744902 88744902 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a SOX9 6662 broad.mit.edu;ucsc.edu 37 17 70119068 70119068 + Missense_Mutation SNP T C C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a SPAG5 10615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26920003 26920003 + Missense_Mutation SNP A A G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a TNFRSF1A 7132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6440021 6440021 + Missense_Mutation SNP G G A novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179428026 179428026 + Silent SNP T T C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179441832 179441832 + Missense_Mutation SNP A A T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179616303 179616303 + Missense_Mutation SNP T T G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a UBAP2L 9898 broad.mit.edu;ucsc.edu 37 1 154229659 154229659 + Missense_Mutation SNP A C C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a UNK 85451 broad.mit.edu;hgsc.bcm.edu 37 17 73814848 73814848 + Silent SNP A A C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a USH1C 10083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17531374 17531374 + Silent SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a USP40 55230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234431973 234431973 + Missense_Mutation SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ZBTB43 23099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 129595818 129595818 + Frame_Shift_Del DEL G G - novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ZC3HAV1 56829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138794026 138794026 + Missense_Mutation SNP C C T novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ZNF687 57592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151259347 151259347 + Missense_Mutation SNP C C G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a ZNF804A 91752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 185801058 185801058 + Missense_Mutation SNP G G C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a LOC441089 0 broad.mit.edu 37 5 79646840 79646840 + RNA DEL T - - rs150619956 bycluster;by1000genomes TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a RNF19B 127544 broad.mit.edu 37 1 33415334 33415334 + Missense_Mutation SNP A G G novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a SDHAP2 727956 broad.mit.edu 37 3 195400728 195400728 + Silent SNP A G G rs77981248 TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a TULP4 56995 broad.mit.edu 37 6 158923758 158923758 + Silent SNP G C C novel TCGA-BP-5185-01A-01D-1429-08 TCGA-BP-5185-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 42dc6d82-f52a-4b13-b3bc-c63002b47e98 b196abf3-5cdd-43a6-9891-67410109b05a