Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAM33 80332 broad.mit.edu;hgsc.bcm.edu 37 20 3653456 3653456 + Missense_Mutation SNP G G A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d ALMS1 7840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73680768 73680768 + Missense_Mutation SNP A A C novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d ARCN1 372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118454666 118454666 + Missense_Mutation SNP C C T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d BMPR1B 658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 96035969 96035969 + Missense_Mutation SNP G G T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d BOC 91653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 112998188 112998188 + Missense_Mutation SNP A A C novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d C6orf162 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 88046871 88046871 + Missense_Mutation SNP T T C novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d CDT1 81620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88872184 88872184 + Missense_Mutation SNP T T G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d CYP1A2 1544 hgsc.bcm.edu 37 15 75044488 75044489 + Frame_Shift_Ins INS - - G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d ELP2 55250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33734957 33734957 + Missense_Mutation SNP T T G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d FGFR3 2261 hgsc.bcm.edu 37 4 1807542 1807543 + Frame_Shift_Ins INS - - G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d GON4L 54856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155732098 155732098 + Silent SNP C C A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d HCFC2 29915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104476292 104476293 + Frame_Shift_Ins INS - - T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d HNRNPA0 10949 hgsc.bcm.edu 37 5 137088945 137088946 + In_Frame_Ins INS - - GCT novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d IDE 3416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 94239093 94239093 + Missense_Mutation SNP A A G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d KDM6A 7403 broad.mit.edu;hgsc.bcm.edu 37 X 44928976 44928976 + Silent SNP G G A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d KRT31 3881 broad.mit.edu;hgsc.bcm.edu 37 17 39553695 39553695 + Missense_Mutation SNP C C T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6980564 6980564 + Missense_Mutation SNP C C T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d LNPEP 4012 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 96315099 96315099 + Missense_Mutation SNP A A G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d LONP1 9361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5699087 5699087 + Missense_Mutation SNP G G C novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d MTF1 4520 broad.mit.edu;ucsc.edu 37 1 38323150 38323150 + Nonsense_Mutation SNP C A A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d NDUFA13 51079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19637065 19637065 + Missense_Mutation SNP C C T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d NOL6 65083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 33467191 33467191 + Nonsense_Mutation SNP C C A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d PHF12 57649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27251182 27251182 + Missense_Mutation SNP C C T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d PHF20L1 51105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 133850030 133850030 + Missense_Mutation SNP T T C novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d PRSS55 203074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10396087 10396087 + Silent SNP C C G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d RALGAPB 57148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37150191 37150191 + Missense_Mutation SNP C C T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d RGS22 26166 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101014479 101014479 + Missense_Mutation SNP T T G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d SAMD9L 219285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92763473 92763473 + Silent SNP T T C novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d SNORD10 652966 broad.mit.edu;hgsc.bcm.edu 37 17 7480257 7480257 + RNA SNP T T A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d SNTG1 54212 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 51415372 51415372 + Missense_Mutation SNP C C T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d TCTEX1D2 255758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196022891 196022891 + Missense_Mutation SNP C C T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d TMPO 7112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 98927778 98927778 + Missense_Mutation SNP G G T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d TUBB2C 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140137408 140137408 + Silent SNP C C A rs151064868 TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d TXNIP 10628 broad.mit.edu;ucsc.edu 37 1 145438912 145438912 + Missense_Mutation SNP A G G novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d VAT1 10493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41169909 41169909 + Missense_Mutation SNP T T A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d ADAMTS10 81794 broad.mit.edu 37 19 8651052 8651052 + Missense_Mutation SNP G T T novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d ANKRD36 375248 broad.mit.edu 37 2 97869931 97869931 + Missense_Mutation SNP A T T rs76309140 bycluster TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d C20orf135 0 broad.mit.edu 37 20 62493290 62493290 + Missense_Mutation SNP C A A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d ITSN1 6453 broad.mit.edu 37 21 35153771 35153771 + Missense_Mutation SNP C A A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d LRRC37A2 474170 broad.mit.edu 37 17 44625842 44625842 + Frame_Shift_Del DEL G - - novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d RSPH10B2 728194 broad.mit.edu 37 7 6006558 6006558 + Missense_Mutation SNP C T T rs150311566 TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d SDHAP2 727956 broad.mit.edu 37 3 195410687 195410687 + Missense_Mutation SNP T A A rs6583274 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d TNRC18 84629 broad.mit.edu 37 7 5364768 5364768 + Frame_Shift_Del DEL T - - novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d Unknown 0 broad.mit.edu 37 11 63998312 63998312 + Missense_Mutation SNP T C C novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d ZSCAN10 84891 broad.mit.edu 37 16 3139570 3139570 + Missense_Mutation SNP G A A novel TCGA-BP-5201-01A-01D-1429-08 TCGA-BP-5201-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 243c77a9-1591-45ac-b048-a5687a77c764 5308d75f-580e-4f35-bd1f-3340a8bd9a8d