Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADRM1 11047 hgsc.bcm.edu;ucsc.edu 37 20 60883769 60883770 + In_Frame_Ins INS - - GACACGAAG novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d AHNAK2 113146 hgsc.bcm.edu 37 14 105416367 105416367 + Silent SNP A A C rs34605366 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d AHNAK2 113146 hgsc.bcm.edu 37 14 105416838 105416838 + Silent SNP C C A rs180896416 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d AHNAK2 113146 hgsc.bcm.edu 37 14 105416839 105416839 + Missense_Mutation SNP G G T rs145693791 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ALG13 79868 hgsc.bcm.edu 37 X 110987996 110987996 + Silent SNP A A T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ANKRD36 375248 hgsc.bcm.edu 37 2 97817647 97817647 + Missense_Mutation SNP A A G rs79579412 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ARL2 402 broad.mit.edu;hgsc.bcm.edu 37 11 64786159 64786159 + Missense_Mutation SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ATG2B 55102 broad.mit.edu;hgsc.bcm.edu 37 14 96789012 96789012 + Missense_Mutation SNP T T G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ATP2A1 487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28913241 28913241 + Missense_Mutation SNP A A T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d C20orf191 0 hgsc.bcm.edu 37 20 26084175 26084175 + RNA SNP G G A rs61752033 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d C3orf72 401089 hgsc.bcm.edu;ucsc.edu 37 3 138668458 138668467 + Frame_Shift_Del DEL GGCATTCGAA GGCATTCGAA - rs141282655 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 GGCATTCGAA GGCATTCGAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d CACNA1S 779 broad.mit.edu;hgsc.bcm.edu 37 1 201036117 201036117 + Missense_Mutation SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d CDCA2 157313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 25364809 25364809 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d CELA3A 10136 hgsc.bcm.edu 37 1 22332241 22332241 + Missense_Mutation SNP A A G rs75527968 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d COG3 83548 broad.mit.edu;hgsc.bcm.edu 37 13 46054427 46054427 + Splice_Site SNP T T C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d COG4 25839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 70548368 70548368 + Missense_Mutation SNP G G C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d CXorf40B 541578 hgsc.bcm.edu 37 X 149102006 149102006 + Silent SNP A A G rs626113 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d DIXDC1 85458 hgsc.bcm.edu 37 11 111835369 111835369 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d DIXDC1 85458 hgsc.bcm.edu;ucsc.edu 37 11 111835364 111835365 + Frame_Shift_Ins INS - - C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d DPCR1 135656 hgsc.bcm.edu 37 6 30917388 30917388 + Missense_Mutation SNP C C A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d EOMES 8320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 27760303 27760303 + Missense_Mutation SNP T T G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d FAM194B 220081 hgsc.bcm.edu 37 13 46170720 46170737 + In_Frame_Del DEL CCAGATACTCTTCCTCCT CCAGATACTCTTCCTCCT - rs142875900 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 CCAGATACTCTTCCTCCT CCAGATACTCTTCCTCCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d FAM86C 0 hgsc.bcm.edu 37 11 71504464 71504464 + Silent SNP C C T rs139287982 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d FLG2 388698 broad.mit.edu;hgsc.bcm.edu 37 1 152330075 152330075 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d FMNL1 752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43323619 43323619 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d FOXD4 2298 hgsc.bcm.edu 37 9 117696 117696 + Missense_Mutation SNP G G A rs9406415 byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d FRY 10129 broad.mit.edu;hgsc.bcm.edu 37 13 32776165 32776165 + Missense_Mutation SNP G G T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d GNAS 2778 hgsc.bcm.edu 37 20 57428889 57428889 + Missense_Mutation SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d GPRIN1 114787 hgsc.bcm.edu 37 5 176026138 176026138 + Missense_Mutation SNP T T A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d GPRIN2 9721 hgsc.bcm.edu 37 10 46999601 46999601 + Missense_Mutation SNP G G A rs9422022 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d GXYLT1 283464 hgsc.bcm.edu 37 12 42512967 42512967 + Missense_Mutation SNP A A T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d HGC6.3 100128124 hgsc.bcm.edu 37 6 168376866 168376866 + Missense_Mutation SNP T T C rs71305249 alternate_allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d HGC6.3 100128124 hgsc.bcm.edu 37 6 168376869 168376869 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d HHIPL2 79802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222705449 222705449 + Missense_Mutation SNP G G T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d HNRNPCL1 343069 hgsc.bcm.edu 37 1 12907781 12907781 + Missense_Mutation SNP T T C rs28441396 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d HOXD3 3232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 177033941 177033941 + Silent SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d HOXD3 3232 broad.mit.edu;ucsc.edu 37 2 177033940 177033940 + Missense_Mutation SNP G C C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d INSC 387755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 15222420 15222420 + Silent SNP G G C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d IPO8 10526 hgsc.bcm.edu 37 12 30790090 30790090 + Missense_Mutation SNP G G T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ISY1 57461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128848936 128848936 + Silent SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d JMJD7 100137047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42128715 42128715 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d KDM4A 9682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44159696 44159696 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d KLHL31 401265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 53516418 53516418 + Missense_Mutation SNP G G T rs12204882 alternate_allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d KRT3 3850 hgsc.bcm.edu 37 12 53189410 53189410 + Silent SNP A A C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d KRT3 3850 hgsc.bcm.edu 37 12 53189428 53189428 + Silent SNP C C A rs184322044 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d KRTAP4-8 728224 hgsc.bcm.edu 37 17 39254247 39254247 + Nonsense_Mutation SNP A A T rs137943557 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d L1TD1 54596 hgsc.bcm.edu 37 1 62672389 62672390 + In_Frame_Ins INS - - AACAGA novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d LPHN1 22859 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14268697 14268697 + Missense_Mutation SNP C C G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MMP25 64386 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3100414 3100414 + Silent SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MPHOSPH10 10199 broad.mit.edu;hgsc.bcm.edu 37 2 71360677 71360677 + Missense_Mutation SNP G G T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11188078 11188078 + Missense_Mutation SNP C C G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9089241 9089241 + Missense_Mutation SNP A A C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC16 94025 hgsc.bcm.edu 37 19 8999488 8999488 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC2 4583 broad.mit.edu;hgsc.bcm.edu 37 11 1093272 1093272 + Silent SNP A A C rs56230143 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC2 4583 hgsc.bcm.edu 37 11 1092996 1092996 + Silent SNP C C A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC2 4583 hgsc.bcm.edu 37 11 1093569 1093569 + Silent SNP A A C rs72842460 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195513539 195513539 + Missense_Mutation SNP C C G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195513540 195513540 + Silent SNP A A G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195513541 195513541 + Missense_Mutation SNP T T C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195515026 195515026 + Missense_Mutation SNP G G C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 hgsc.bcm.edu 37 3 195513398 195513398 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 hgsc.bcm.edu 37 3 195513445 195513445 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 hgsc.bcm.edu 37 3 195513491 195513491 + Missense_Mutation SNP G G T rs79338930 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 hgsc.bcm.edu 37 3 195513502 195513502 + Missense_Mutation SNP T T G rs75765493 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC6 4588 hgsc.bcm.edu 37 11 1017797 1017797 + Silent SNP C C G rs76800954 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d NEDD4L 23327 broad.mit.edu;hgsc.bcm.edu 37 18 56033230 56033230 + Splice_Site SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d NKAIN3 286183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 63902748 63902748 + Missense_Mutation SNP G G T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d OBSL1 23363 broad.mit.edu;hgsc.bcm.edu 37 2 220428159 220428159 + Silent SNP C C A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d OR2T34 127068 hgsc.bcm.edu 37 1 248737348 248737348 + Silent SNP G G A rs61833442 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d OR4C45 403257 hgsc.bcm.edu 37 11 48373827 48373827 + Missense_Mutation SNP G G A rs80081241 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d OR4F15 390649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 102358604 102358604 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d OR51B5 282763 hgsc.bcm.edu;ucsc.edu 37 11 5364542 5364558 + Frame_Shift_Del DEL CAGCCCCAGGTCTGTGG CAGCCCCAGGTCTGTGG - rs147062602 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 CAGCCCCAGGTCTGTGG CAGCCCCAGGTCTGTGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PABPC1 26986 hgsc.bcm.edu 37 8 101718965 101718965 + Missense_Mutation SNP G G A rs62513921 bycluster TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PABPC1 26986 hgsc.bcm.edu 37 8 101718968 101718968 + Missense_Mutation SNP C C T rs62513922 bycluster TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52702662 52702662 + Splice_Site SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PCDHA6 56142 broad.mit.edu;hgsc.bcm.edu 37 5 140209499 140209499 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PDZRN3 23024 broad.mit.edu;hgsc.bcm.edu 37 3 73432856 73432856 + Missense_Mutation SNP C C A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PILRB 29990 hgsc.bcm.edu 37 7 99956439 99956439 + Missense_Mutation SNP T T C rs35986051 byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PLAC4 191585 hgsc.bcm.edu 37 21 42551425 42551425 + Missense_Mutation SNP C C G rs5019195 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PLIN4 729359 hgsc.bcm.edu 37 19 4512945 4512945 + Missense_Mutation SNP C C T rs75031432 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PLIN4 729359 hgsc.bcm.edu 37 19 4512946 4512946 + Silent SNP A A G rs79662071 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PLIN4 729359 hgsc.bcm.edu;ucsc.edu 37 19 4511491 4511491 + Silent SNP A A G rs10423324 bycluster;byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PLIN4 729359 hgsc.bcm.edu;ucsc.edu 37 19 4512890 4512890 + Missense_Mutation SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PRSS1 5644 hgsc.bcm.edu 37 7 142459716 142459716 + Missense_Mutation SNP C C A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PRSS1 5644 hgsc.bcm.edu 37 7 142460415 142460415 + Silent SNP T T C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PRSS16 10279 hgsc.bcm.edu;ucsc.edu 37 6 27223065 27223079 + In_Frame_Del DEL AAGGAGAGCCAGATT AAGGAGAGCCAGATT - rs141138864 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 AAGGAGAGCCAGATT AAGGAGAGCCAGATT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PRSS3 5646 hgsc.bcm.edu 37 9 33798079 33798079 + Silent SNP T T C rs144845866 byfrequency TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PRSS41 360226 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2849526 2849526 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PRUNE2 158471 hgsc.bcm.edu;ucsc.edu 37 9 79323220 79323220 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PTCHD3 374308 broad.mit.edu;hgsc.bcm.edu 37 10 27702370 27702370 + Silent SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PUM2 23369 broad.mit.edu;ucsc.edu 37 2 20451396 20451396 + Missense_Mutation SNP T A A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PUM2 23369 broad.mit.edu;ucsc.edu 37 2 20451397 20451397 + Silent SNP C T T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PYROXD1 79912 broad.mit.edu;hgsc.bcm.edu 37 12 21621622 21621622 + Missense_Mutation SNP G G C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d RBM44 375316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238733023 238733023 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d SBSN 374897 hgsc.bcm.edu 37 19 36018434 36018434 + Silent SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d SLC26A4 5172 broad.mit.edu;hgsc.bcm.edu 37 7 107329537 107329537 + Silent SNP G G A rs140778437 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d SLC35B3 51000 broad.mit.edu;hgsc.bcm.edu 37 6 8422813 8422813 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d SLC7A5 8140 hgsc.bcm.edu 37 16 87885388 87885388 + Silent SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d SRRM1 10250 broad.mit.edu;hgsc.bcm.edu 37 1 24993365 24993365 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64408465 64408465 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d TCEAL3 85012 hgsc.bcm.edu 37 X 102864334 102864334 + Silent SNP G G A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d TCP11 6954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35086049 35086049 + Silent SNP A A G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d TMEM41A 90407 hgsc.bcm.edu 37 3 185212513 185212513 + Silent SNP A A G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179449638 179449638 + Missense_Mutation SNP C C T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19407977 19407977 + Silent SNP G G A rs138176260 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d VCX2 51480 hgsc.bcm.edu 37 X 8138170 8138170 + Missense_Mutation SNP C C G rs75657421 byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191485 10191485 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d WDR73 84942 hgsc.bcm.edu;ucsc.edu 37 15 85186877 85186894 + In_Frame_Del DEL CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT - rs11267906 bycluster;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 CTTGGCTCCGTGTTCCAT CTTGGCTCCGTGTTCCAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ZBED5 58486 broad.mit.edu;ucsc.edu 37 11 10875055 10875055 + Missense_Mutation SNP T C C rs1046297 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ZNF354A 6940 hgsc.bcm.edu;ucsc.edu 37 5 178139394 178139394 + Silent SNP T T C rs191516498 by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d ZP4 57829 broad.mit.edu;ucsc.edu 37 1 238045723 238045723 + Nonstop_Mutation SNP T A A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d C15orf51 0 broad.mit.edu 37 15 100340123 100340125 + RNA DEL AGA - - novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 AGA AGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d FCGBP 8857 broad.mit.edu 37 19 40363154 40363154 + Missense_Mutation SNP C A A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d FLJ40330 0 broad.mit.edu 37 2 89100619 89100619 + RNA SNP C T T rs75347118 bycluster TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d HGC6.3 100128124 broad.mit.edu 37 6 168376953 168376953 + Missense_Mutation SNP A C C rs2516607 bycluster;byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d LIMS1 3987 broad.mit.edu 37 2 109293101 109293101 + Missense_Mutation SNP C T T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d LOC645752 645752 broad.mit.edu 37 15 78208239 78208239 + Silent SNP T C C rs74587726 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MED27 9442 broad.mit.edu 37 9 134735980 134735980 + Missense_Mutation SNP G A A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MST1P2 11209 broad.mit.edu 37 1 16975495 16975495 + RNA SNP T C C rs2761532 bycluster;by2hit2allele TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MUC4 4585 broad.mit.edu 37 3 195509182 195509182 + Missense_Mutation SNP G T T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d NBPF9 400818 broad.mit.edu 37 1 144618201 144618201 + Missense_Mutation SNP T C C rs61809737 byfrequency;by1000genomes TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d NBPF9 400818 broad.mit.edu 37 1 144815953 144815953 + Missense_Mutation SNP A G G rs79736150 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d NBPF9 400818 broad.mit.edu 37 1 144815968 144815968 + Missense_Mutation SNP G A A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d POM121L9P 29774 broad.mit.edu 37 22 24656904 24656904 + RNA SNP C T T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d PRB1 5542 broad.mit.edu 37 12 11506350 11506350 + Silent SNP C T T novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d RGPD3 653489 broad.mit.edu 37 2 107040985 107040985 + Silent SNP T C C rs140856347 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d RGPD4 285190 broad.mit.edu 37 2 108487877 108487877 + Silent SNP T C C novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d SLC7A8 23428 broad.mit.edu 37 14 23635685 23635685 + Silent SNP C A A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d SPDYE7P 441251 broad.mit.edu 37 7 72334607 72334607 + RNA SNP T C C rs75521930 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d TTN 7273 broad.mit.edu 37 2 179437576 179437576 + Missense_Mutation SNP A G G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d Unknown 0 broad.mit.edu 37 11 13001936 13001936 + RNA DEL A - - novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d Unknown 0 broad.mit.edu 37 1 148891580 148891580 + RNA SNP A T T rs3880332 bycluster TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d Unknown 0 broad.mit.edu 37 1 148891643 148891643 + RNA SNP A G G rs71219755 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d Unknown 0 broad.mit.edu 37 19 22785425 22785425 + RNA SNP G A A novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d Unknown 0 broad.mit.edu 37 22 18844888 18844888 + RNA SNP A G G rs495165 TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d MTOR 2475 broad.mit.edu 37 1 11188100 11188100 + Missense_Mutation SNP C G G novel TCGA-CJ-4644-01A-02D-1386-10 TCGA-CJ-4644-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5 2c245ee8-d654-497e-b55f-6ecaf733379d