Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCB5 340273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 20768032 20768032 + Missense_Mutation SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ALG10B 144245 broad.mit.edu;hgsc.bcm.edu 37 12 38714340 38714340 + Missense_Mutation SNP G G T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ALPP 250 broad.mit.edu;hgsc.bcm.edu 37 2 233246013 233246013 + Silent SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ANK2 287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 114267059 114267059 + Missense_Mutation SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de APOBEC2 10930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 41021140 41021140 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de AQR 9716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35176806 35176806 + Missense_Mutation SNP T T C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de C17orf68 0 hgsc.bcm.edu;ucsc.edu 37 17 8141944 8141944 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de C17orf74 201243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7330515 7330515 + Missense_Mutation SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de COPS7A 50813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6837091 6837091 + Splice_Site SNP G G C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de DIRAS1 148252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2717570 2717570 + Missense_Mutation SNP C C A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de DNAJB8 165721 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128181497 128181497 + Missense_Mutation SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de FAM190B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 86132205 86132205 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de FAT2 2196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150948075 150948075 + Missense_Mutation SNP C C A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de FREM1 158326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 14823201 14823201 + Missense_Mutation SNP C C G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de FRMPD2 143162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 49392912 49392912 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de GAL3ST3 89792 broad.mit.edu;hgsc.bcm.edu 37 11 65810470 65810470 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de GPR116 221395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46849806 46849806 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de GSPT2 23708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 51487802 51487802 + Silent SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de GUCY2F 2986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 108708503 108708503 + Missense_Mutation SNP G G T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de HEMGN 55363 broad.mit.edu;ucsc.edu 37 9 100693156 100693156 + Missense_Mutation SNP G T T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de HERC1 8925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63948032 63948032 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de HPS1 3257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 100177390 100177390 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de HUWE1 10075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53675215 53675215 + Silent SNP A A C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ICA1 3382 broad.mit.edu;ucsc.edu 37 7 8178473 8178473 + Missense_Mutation SNP C G G rs143861719 byfrequency TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de INTS6 26512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 51948840 51948840 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ITPRIPL1 150771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96992895 96992895 + Missense_Mutation SNP G G T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de JMJD1C 221037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 64957276 64957276 + Missense_Mutation SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de KBTBD2 25948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 32909021 32909021 + Missense_Mutation SNP A A G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de KDM5B 10765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202743819 202743819 + Missense_Mutation SNP C C G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de KIAA1704 55425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 45578485 45578485 + Missense_Mutation SNP A A C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de KRT24 192666 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38859817 38859817 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de KRTAP13-4 284827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31802847 31802847 + Missense_Mutation SNP T T G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de LIAS 11019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39472863 39472863 + Silent SNP T T C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de MAP3K5 4217 hgsc.bcm.edu;ucsc.edu 37 6 137015318 137015319 + Frame_Shift_Del INS - - A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de MLL5 55904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104752966 104752966 + Missense_Mutation SNP A A G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de MLL5 55904 hgsc.bcm.edu;ucsc.edu 37 7 104748211 104748211 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de NBEA 26960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 35747666 35747668 + In_Frame_Del DEL TCT TCT - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 TCT TCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de NEDD4 4734 broad.mit.edu;ucsc.edu 37 15 56140568 56140568 + Splice_Site DEL A - - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de NOS3 4846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150693640 150693640 + Missense_Mutation SNP G G T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de NOX5 79400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 69328249 69328249 + Silent SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de NTN5 126147 broad.mit.edu;hgsc.bcm.edu 37 19 49173943 49173943 + Missense_Mutation SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de OR3A4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3213905 3213905 + RNA SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de PACS1 55690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65983684 65983684 + Missense_Mutation SNP C C G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de PLEKHG2 64857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39913384 39913384 + Missense_Mutation SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de POLQ 10721 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121207746 121207746 + Silent SNP T T A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de PPP5C 5536 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46890487 46890487 + Missense_Mutation SNP G G C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de PRAM1 84106 broad.mit.edu;ucsc.edu 37 19 8564274 8564274 + Missense_Mutation SNP G C C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de PREPL 9581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44556213 44556213 + Silent SNP A A C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de PUM2 23369 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20511383 20511383 + Missense_Mutation SNP A A T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de RAI2 10742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17819213 17819213 + Silent SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de RBMX 27316 hgsc.bcm.edu 37 X 135961597 135961597 + RNA SNP T T C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49320719 49320719 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de SETD3 84193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 99932086 99932086 + Silent SNP A A G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de SIRPB2 284759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1460670 1460670 + Silent SNP T T C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de SLC36A1 206358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150867782 150867782 + Silent SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de SMAD3 4088 hgsc.bcm.edu;ucsc.edu 37 15 67477111 67477111 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de SPTBN2 6712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66472813 66472813 + Missense_Mutation SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de SYNE1 23345 broad.mit.edu;hgsc.bcm.edu 37 6 152599304 152599304 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de TOX2 84969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 42574588 42574588 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de TRIOBP 11078 hgsc.bcm.edu;ucsc.edu 37 22 38134696 38134696 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de TTBK2 146057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43109262 43109262 + Missense_Mutation SNP G G C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de VPS52 6293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33231657 33231657 + Splice_Site SNP C C T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de WDR89 112840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64066630 64066630 + Silent SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de XIAP 331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123020288 123020288 + Missense_Mutation SNP A A G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ZDHHC1 29800 broad.mit.edu;ucsc.edu 37 16 67429119 67429119 + Missense_Mutation SNP G T T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ZFHX3 463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72830806 72830806 + Silent SNP A A T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ZKSCAN2 342357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 25266607 25266607 + Missense_Mutation SNP C C A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ZNF583 147949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56934784 56934784 + Missense_Mutation SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ZNF831 128611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 57769082 57769082 + Missense_Mutation SNP G G A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ADAMTS7 11173 broad.mit.edu 37 15 79051886 79051886 + Silent SNP G A A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de CEP290 80184 broad.mit.edu 37 12 88483261 88483261 + Missense_Mutation SNP G C C novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de CRTAC1 55118 broad.mit.edu 37 10 99655168 99655168 + Silent SNP G A A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de DPH2 1802 broad.mit.edu 37 1 44436377 44436377 + Missense_Mutation SNP G A A novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de LOC284232 0 broad.mit.edu 37 13 19414102 19414102 + RNA SNP C T T novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de LRRC37B2 0 broad.mit.edu 37 17 28961189 28961189 + Frame_Shift_Del DEL A - - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de ROBO3 64221 broad.mit.edu 37 11 124750448 124750453 + In_Frame_Del DEL CGGAGT - - rs71859853 bycluster;by1000genomes TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 CGGAGT CGGAGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de SP8 221833 broad.mit.edu 37 7 20824941 20824943 + In_Frame_Del DEL GCC - - novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 GCC GCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de Unknown 0 broad.mit.edu 37 19 23406130 23406130 + Missense_Mutation SNP C G G novel TCGA-CJ-4897-01A-03D-1429-08 TCGA-CJ-4897-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c1331eec-e2df-4924-918b-7e5134e933c2 d294e13c-9c97-4dcb-a1ac-4b345a27c4de