Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AFF3 3899 hgsc.bcm.edu;ucsc.edu 37 2 100210705 100210705 + Frame_Shift_Del DEL T T - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 AKAP4 8852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 49957227 49957227 + Nonsense_Mutation SNP T T A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ALS2CR8 79800 broad.mit.edu;ucsc.edu 37 2 203818776 203818776 + Missense_Mutation SNP T G G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ANAPC16 119504 hgsc.bcm.edu 37 10 73992824 73992825 + Frame_Shift_Ins INS - - G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ANKIB1 54467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91924303 91924303 + Missense_Mutation SNP C C A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ARHGEF18 23370 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7509264 7509264 + Missense_Mutation SNP G G A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ATP8B2 57198 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154313463 154313463 + Missense_Mutation SNP T T G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 C11orf46 0 hgsc.bcm.edu 37 11 30352754 30352754 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 C11orf46 0 hgsc.bcm.edu 37 11 30352756 30352756 + Missense_Mutation SNP A A C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 C19orf47 126526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40829950 40829950 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 C1orf159 54991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1021312 1021312 + Missense_Mutation SNP A A C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 C22orf31 25770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 29456415 29456415 + Silent SNP T T C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 CDV3 55573 broad.mit.edu;ucsc.edu 37 3 133302927 133302927 + Silent SNP T C C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 CFTR 1080 broad.mit.edu;hgsc.bcm.edu 37 7 117251654 117251654 + Silent SNP T T G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 CHRM3 1131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 240070801 240070801 + Missense_Mutation SNP G G C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 CLIC5 53405 hgsc.bcm.edu;ucsc.edu 37 6 45882075 45882076 + Frame_Shift_Del DEL TC TC - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 COL7A1 1294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48626394 48626394 + Missense_Mutation SNP C C A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 COPE 11316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19021795 19021795 + Missense_Mutation SNP G G A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 CROCC 9696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17264218 17264218 + Missense_Mutation SNP A A G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 DEFB114 245928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 49928062 49928062 + Silent SNP G G T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56484970 56484971 + Frame_Shift_Del DEL AG AG - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 FAM135A 57579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71234370 71234370 + Missense_Mutation SNP G G C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 FAM160B2 64760 broad.mit.edu;hgsc.bcm.edu 37 8 21956566 21956566 + Missense_Mutation SNP C C G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 FAM178A 55719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102684302 102684302 + Missense_Mutation SNP C C G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 FAM186A 121006 hgsc.bcm.edu 37 12 50745913 50745948 + In_Frame_Del DEL TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 FAM55D 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 114442140 114442140 + Silent SNP C C A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 FIGNL1 63979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 50513982 50513982 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 HEATR5A 25938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31817065 31817065 + Silent SNP G G A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 HHIPL2 79802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 222717069 222717069 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 HJURP 55355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234749785 234749785 + Silent SNP A A G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 HOXA1 3198 hgsc.bcm.edu 37 7 27135314 27135316 + In_Frame_Del DEL CGA CGA - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 CGA CGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 INTS6 26512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 51943326 51943326 + Missense_Mutation SNP G G T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 KCNA2 3737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111146166 111146166 + Missense_Mutation SNP G G C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 KIAA1524 57650 broad.mit.edu;ucsc.edu 37 3 108281998 108281998 + Missense_Mutation SNP G A A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 LTBP1 4052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 33534505 33534505 + Silent SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 MAN1A1 4121 hgsc.bcm.edu;ucsc.edu 37 6 119522461 119522461 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 MCOLN3 55283 hgsc.bcm.edu;ucsc.edu 37 1 85486913 85486913 + Frame_Shift_Del DEL T T - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 NCOR1 9611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15952284 15952284 + Silent SNP T T G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 NELL2 4753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 44915937 44915937 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 NLRP12 91662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54313326 54313326 + Silent SNP G G A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 NRG3 10718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 84745303 84745303 + Missense_Mutation SNP G G A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 OR2L13 284521 broad.mit.edu;hgsc.bcm.edu 37 1 248263038 248263038 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 OR2L8 391190 broad.mit.edu;hgsc.bcm.edu 37 1 248112511 248112511 + Missense_Mutation SNP G G A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 PAPD4 167153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78936786 78936786 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 PBXIP1 57326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154918597 154918597 + Missense_Mutation SNP T T G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 PDZD2 23037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32089797 32089797 + Silent SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 PHAX 51808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 125939331 125939331 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 PHF16 9767 broad.mit.edu;ucsc.edu 37 X 46887397 46887397 + Silent SNP A C C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 PIAS4 51588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4013124 4013124 + Silent SNP G G A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 PRMT10 90826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148578942 148578942 + Splice_Site SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 PTPN5 84867 broad.mit.edu;ucsc.edu 37 11 18764949 18764949 + Missense_Mutation SNP C T T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 RFC1 5981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39301920 39301920 + Missense_Mutation SNP C C T rs140065280 TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 RGL2 5863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33260019 33260019 + Missense_Mutation SNP G G T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 RHEB 6009 hgsc.bcm.edu;ucsc.edu 37 7 151168454 151168454 + Intron SNP G G C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G G C G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 RPL11 6135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24022342 24022342 + Missense_Mutation SNP A A T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 SHROOM4 57477 hgsc.bcm.edu 37 X 50350758 50350758 + Silent SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 SPA17 53340 hgsc.bcm.edu;ucsc.edu 37 11 124564181 124564203 + Frame_Shift_Del DEL TTTCTCCTTTCGATGAAGGACTC TTTCTCCTTTCGATGAAGGACTC - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 TTTCTCCTTTCGATGAAGGACTC TTTCTCCTTTCGATGAAGGACTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 SPTY2D1 144108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18636132 18636132 + Silent SNP T T G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 SUOX 6821 broad.mit.edu;ucsc.edu 37 12 56397616 56397616 + Missense_Mutation SNP T C C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 TBCD 6904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80765530 80765530 + Nonsense_Mutation SNP G G A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 TEX15 56154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 30706524 30706524 + Missense_Mutation SNP C C A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 THEMIS 387357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 128134336 128134336 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 TKTL2 84076 hgsc.bcm.edu;ucsc.edu 37 4 164393620 164393620 + Frame_Shift_Del DEL C C - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 TLE1 7088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 84205823 84205823 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 TP53 7157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7577097 7577097 + Missense_Mutation SNP C C A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 TRIM62 55223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33612891 33612891 + Missense_Mutation SNP A A G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19447690 19447690 + Silent SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 USP51 158880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55514285 55514285 + Missense_Mutation SNP C C G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191479 10191479 + Missense_Mutation SNP C C G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 WBSCR17 64409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 71142217 71142217 + Missense_Mutation SNP G G C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 WDR33 55339 hgsc.bcm.edu;ucsc.edu 37 2 128480195 128480195 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 WDR87 83889 hgsc.bcm.edu 37 19 38377432 38377432 + Silent SNP T T C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 WFIKKN2 124857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48918195 48918195 + Missense_Mutation SNP C C G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ZFAND2B 130617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220073018 220073018 + Missense_Mutation SNP A A G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ZNF318 24149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43304999 43304999 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ZNF608 57507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 123983986 123983986 + Missense_Mutation SNP C C T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ZNF92 168374 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 64864567 64864567 + Frame_Shift_Del DEL T T - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 C17orf56 0 broad.mit.edu 37 17 79204474 79204474 + Missense_Mutation SNP G A A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 CEP170 9859 broad.mit.edu 37 1 243328076 243328076 + Missense_Mutation SNP C G G novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 DNM1 1759 broad.mit.edu 37 9 131012518 131012518 + Missense_Mutation SNP C T T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 JPH2 57158 broad.mit.edu 37 20 42788569 42788569 + Silent SNP G A A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 LOC401127 401127 broad.mit.edu 37 4 39482624 39482624 + RNA SNP T C C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 MATK 4145 broad.mit.edu 37 19 3783901 3783901 + Missense_Mutation SNP C T T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 MUC4 4585 broad.mit.edu 37 3 195505855 195505855 + Missense_Mutation SNP G T T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 POU6F2 11281 broad.mit.edu 37 7 39500263 39500263 + Missense_Mutation SNP A T T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 SCML1 6322 broad.mit.edu 37 X 17763603 17763603 + Nonsense_Mutation SNP G T T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 SIGLEC6 946 broad.mit.edu 37 19 52035065 52035069 + Splice_Site DEL AGAGA - - novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 AGAGA AGAGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 TUBBP5 643224 broad.mit.edu 37 9 141071478 141071478 + Missense_Mutation SNP G C C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ZNF28 7576 broad.mit.edu 37 19 53321205 53321205 + Missense_Mutation SNP G C C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 ZNF479 90827 broad.mit.edu 37 7 57188569 57188569 + Missense_Mutation SNP A T T novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594 TP53 7157 broad.mit.edu 37 17 7577565 7577565 + Missense_Mutation SNP T C C novel TCGA-CJ-5677-01A-11D-1534-10 TCGA-CJ-5677-11A-01D-1534-10 T T T C T T Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 70fe0b18-52d1-40f7-b2a3-c808b3009610 d637e1a3-936e-4e97-b95e-bced6aec8594