Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABAT 18 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 8844355 8844355 + Missense_Mutation SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d ACSM2B 348158 broad.mit.edu;hgsc.bcm.edu 37 16 20548590 20548590 + Missense_Mutation SNP C C T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d AKAP9 10142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 91709305 91709305 + Missense_Mutation SNP A A T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d ATP7A 538 hgsc.bcm.edu 37 X 77284798 77284799 + Frame_Shift_Ins INS - - A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d BAHCC1 57597 broad.mit.edu;hgsc.bcm.edu 37 17 79426336 79426336 + Silent SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d BOC 91653 broad.mit.edu;hgsc.bcm.edu 37 3 112998705 112998705 + Missense_Mutation SNP C C A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d C19orf12 83636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 30193856 30193856 + Silent SNP G G T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d C1orf55 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226180697 226180697 + Missense_Mutation SNP C C A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d CACNA1A 773 hgsc.bcm.edu;ucsc.edu 37 19 13366037 13366038 + Frame_Shift_Del DEL GC GC - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d CCDC126 90693 broad.mit.edu;ucsc.edu 37 7 23650959 23650959 + Missense_Mutation SNP A C C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d CDK3 1018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73999331 73999331 + Missense_Mutation SNP T T A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d CDK3 1018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73999332 73999332 + Missense_Mutation SNP C C G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d CLPB 81570 broad.mit.edu;ucsc.edu 37 11 72012879 72012879 + Missense_Mutation SNP C T T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d CNST 163882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 246797267 246797267 + Missense_Mutation SNP C C A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d DCC 1630 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 50683750 50683750 + Missense_Mutation SNP C C A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d DENND4C 55667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 19305459 19305459 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d DPAGT1 1798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118968667 118968667 + Missense_Mutation SNP C C T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d EEA1 8411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 93171332 93171332 + Frame_Shift_Del DEL T T - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d EMID2 136227 hgsc.bcm.edu 37 7 101063320 101063320 + Missense_Mutation SNP C C T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d FAM73A 374986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78249000 78249000 + Silent SNP T T C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d FBN3 84467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8162185 8162185 + Silent SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d FBXO30 84085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146126842 146126842 + Missense_Mutation SNP T T C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d FBXO3 26273 broad.mit.edu;ucsc.edu 37 11 33790514 33790514 + Missense_Mutation SNP C A A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d FDPS 2224 broad.mit.edu;hgsc.bcm.edu 37 1 155279736 155279736 + Silent SNP A A G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d GLRA3 8001 broad.mit.edu;ucsc.edu 37 4 175649781 175649781 + Silent SNP A G G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d GPSM2 29899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109466798 109466798 + Missense_Mutation SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d HIAT1 64645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100503796 100503796 + Missense_Mutation SNP A A T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d HTR1E 3354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87725912 87725912 + Missense_Mutation SNP G G A rs61735411 TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d KRT13 3860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39659227 39659227 + Missense_Mutation SNP T T C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d KRT82 3888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52795073 52795075 + Frame_Shift_Del DEL CTT CTT - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57548478 57548478 + Silent SNP C C T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170026249 170026249 + Silent SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d LRP5 4041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68183829 68183829 + Missense_Mutation SNP C C A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MAGI3 260425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 114193677 114193677 + Missense_Mutation SNP A A T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MAX 4149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65569042 65569042 + Missense_Mutation SNP C C A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d METT11D1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21461323 21461323 + Missense_Mutation SNP T T G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151877902 151877902 + Missense_Mutation SNP T T C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T T C T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MOGAT2 80168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 75438650 75438650 + Silent SNP G G T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MTMR7 9108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17157530 17157530 + Silent SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MUC13 56667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 124635228 124635228 + Silent SNP C C T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MUC4 4585 hgsc.bcm.edu 37 3 195514998 195515045 + In_Frame_Del DEL GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MYO5A 4644 broad.mit.edu;ucsc.edu 37 15 52720650 52720650 + Silent SNP C G G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d NAA16 79612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41932483 41932483 + Missense_Mutation SNP G G C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d NEFH 4744 hgsc.bcm.edu 37 22 29885572 29885573 + In_Frame_Ins INS - - CCCTGAGAAGGCCAAGTC novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d NFASC 23114 broad.mit.edu;hgsc.bcm.edu 37 1 204955082 204955082 + Silent SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d NOM1 64434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156759742 156759742 + Missense_Mutation SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d OBSCN 84033 broad.mit.edu;hgsc.bcm.edu 37 1 228403481 228403481 + Silent SNP G G C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d OR7C1 26664 hgsc.bcm.edu 37 19 14910638 14910638 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d PAPSS1 9061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 108574727 108574727 + Missense_Mutation SNP C C T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55779999 55779999 + Missense_Mutation SNP A A T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d PCDHB14 56122 broad.mit.edu;hgsc.bcm.edu 37 5 140605198 140605198 + Frame_Shift_Del DEL G G - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d PDK2 5164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48183306 48183306 + Missense_Mutation SNP G G T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d PIGQ 9091 hgsc.bcm.edu 37 16 632283 632283 + Missense_Mutation SNP G G A rs7187227 bycluster;byfrequency;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d PPP2R1A 5518 hgsc.bcm.edu;ucsc.edu 37 19 52723429 52723429 + RNA SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d RASA3 22821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114782719 114782719 + Silent SNP G G T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d RBAK 57786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5105059 5105059 + Missense_Mutation SNP A A G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d RNASEL 6041 broad.mit.edu;ucsc.edu 37 1 182551376 182551376 + Silent SNP G A A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d RPTN 126638 broad.mit.edu;ucsc.edu 37 1 152127611 152127611 + Missense_Mutation SNP C T T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 33842489 33842489 + Missense_Mutation SNP C C G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d SDK1 221935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4218194 4218194 + Missense_Mutation SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d SFRS15 0 hgsc.bcm.edu 37 21 33058544 33058544 + Intron SNP A A C rs80021168 alternate_allele TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A A C A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d SLC23A2 9962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 4839999 4839999 + Silent SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d SLC35A4 113829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139946853 139946853 + Silent SNP T T C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d SLC47A2 146802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 19610039 19610039 + Missense_Mutation SNP A A G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d SYT12 91683 hgsc.bcm.edu 37 11 66816101 66816101 + Missense_Mutation SNP G G A rs141165304 byfrequency TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d TCP11 6954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35086231 35086231 + Nonsense_Mutation SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d TDP1 55775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 90437547 90437547 + Missense_Mutation SNP G G A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d TMEM132B 114795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 125834194 125834194 + Silent SNP T T C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d TNFAIP6 7130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152220485 152220485 + Missense_Mutation SNP A A C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d TPH1 7166 broad.mit.edu;ucsc.edu 37 11 18045491 18045491 + Missense_Mutation SNP C A A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d URB1 9875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33744827 33744827 + Silent SNP A A T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d USP2 9099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119243611 119243611 + Missense_Mutation SNP A A G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d WDR3 10885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 118483544 118483544 + Missense_Mutation SNP C C T rs142439174 bycluster;byfrequency;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d ADAMTSL5 339366 broad.mit.edu 37 19 1508023 1508023 + Frame_Shift_Del DEL A - - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d ARHGAP23 57636 broad.mit.edu 37 17 36636039 36636039 + Silent SNP C T T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d AZGP1 563 broad.mit.edu 37 7 99573623 99573623 + Silent SNP G T T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d CTAGE6 0 broad.mit.edu 37 7 143453714 143453714 + Missense_Mutation SNP G C C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d HYDIN 54768 broad.mit.edu 37 16 70889122 70889122 + Missense_Mutation SNP A T T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d LOC220429 0 broad.mit.edu 37 13 50466749 50466749 + Missense_Mutation SNP C G G rs57976037 bycluster;byfrequency;by1000genomes TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d LOC283922 283922 broad.mit.edu 37 16 74366481 74366481 + Missense_Mutation SNP A G G novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d MST1P2 11209 broad.mit.edu 37 1 16974182 16974182 + RNA SNP C A A rs4661977 bycluster TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d SNX20 124460 broad.mit.edu 37 16 50709790 50709790 + Missense_Mutation SNP C T T novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d SPAG9 9043 broad.mit.edu 37 17 49197990 49197990 + Missense_Mutation SNP G C C novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d TMEM198 130612 broad.mit.edu 37 2 220412692 220412692 + Frame_Shift_Del DEL C - - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d TNRC18 84629 broad.mit.edu 37 7 5352305 5352305 + Frame_Shift_Del DEL G - - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d UGT1A4 54657 broad.mit.edu 37 2 234628268 234628268 + Missense_Mutation SNP C A A novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d Unknown 0 broad.mit.edu 37 15 62534763 62534764 + RNA DEL TA - - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 TA TA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d Unknown 0 broad.mit.edu 37 8 72316198 72316198 + RNA DEL T - - novel TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d Unknown 0 broad.mit.edu 37 X 155252868 155252868 + Silent SNP T A A rs1128420 TCGA-CJ-5683-01A-11D-1534-10 TCGA-CJ-5683-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b85e29c5-0206-4d65-aa46-179a55c0ceae fdd52cce-70b6-4f2d-873b-dbfe5323841d