Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AAAS 8086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53702266 53702266 + Silent SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56205356 56205356 + Missense_Mutation SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 ANKMY2 57037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 16655424 16655424 + Missense_Mutation SNP T T C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 ASAP2 8853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9531296 9531296 + Missense_Mutation SNP C C T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 ATG7 10533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 11354777 11354777 + Splice_Site SNP G G T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108199913 108199913 + Nonsense_Mutation SNP A A T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 BMP1 649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22034151 22034151 + Missense_Mutation SNP A A G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 BRWD3 254065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 79991541 79991541 + Missense_Mutation SNP C C G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 C8orf34 116328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 69621309 69621309 + Nonsense_Mutation SNP C C G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 C9orf84 158401 broad.mit.edu;hgsc.bcm.edu 37 9 114484858 114484858 + Missense_Mutation SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 CCDC82 79780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 96098194 96098194 + Missense_Mutation SNP A A G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 CDC45 8318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 19467681 19467681 + Missense_Mutation SNP A A T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 CDK15 65061 broad.mit.edu;hgsc.bcm.edu 37 2 202700487 202700487 + Splice_Site SNP G G T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 CDK3 1018 broad.mit.edu;hgsc.bcm.edu 37 17 73998205 73998205 + Silent SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 CENPF 1063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214818891 214818891 + Missense_Mutation SNP C C G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 CSRP3 8048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19213960 19213960 + Silent SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 CSRP3 8048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19213973 19213973 + Missense_Mutation SNP G G T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 DAK 26007 hgsc.bcm.edu;ucsc.edu 37 11 61105442 61105442 + Frame_Shift_Del DEL T T - novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 DBN1 1627 broad.mit.edu;hgsc.bcm.edu 37 5 176894482 176894482 + Silent SNP C C G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 DDX31 64794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135470291 135470291 + Missense_Mutation SNP C C G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 DNAH8 1769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 38952015 38952015 + Missense_Mutation SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 EGLN2 112398 hgsc.bcm.edu;ucsc.edu 37 19 41306619 41306619 + Missense_Mutation SNP T T C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 EMILIN1 11117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27306232 27306232 + Missense_Mutation SNP G G C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 EXTL3 2137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28574199 28574199 + Missense_Mutation SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 FBXW9 84261 broad.mit.edu;hgsc.bcm.edu 37 19 12807200 12807200 + Missense_Mutation SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 FERMT2 10979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 53385908 53385908 + Silent SNP A A G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 FGF14 2259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103053874 103053874 + Missense_Mutation SNP T T A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 FZD10 11211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130648324 130648324 + Silent SNP C C T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 GPR45 11250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 105859391 105859391 + Missense_Mutation SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 GTSE1 51512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46708174 46708174 + Missense_Mutation SNP G G T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 HAUS8 93323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17169444 17169444 + Missense_Mutation SNP T T G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 HECTD3 79654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45473182 45473182 + Missense_Mutation SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 HERPUD2 64224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 35673462 35673462 + Splice_Site SNP C C T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 IGSF10 285313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151154637 151154637 + Missense_Mutation SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 INHBA 3624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 41729694 41729694 + Missense_Mutation SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 IRS4 8471 hgsc.bcm.edu;ucsc.edu 37 X 107976255 107976258 + Frame_Shift_Del DEL CTGT CTGT - novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 CTGT CTGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 KIAA1530 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 1348531 1348531 + Missense_Mutation SNP A A C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 LRRN4CL 221091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62455461 62455461 + Missense_Mutation SNP C C G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 OSBPL6 114880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179203777 179203777 + Missense_Mutation SNP A A G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 PCSK6 5046 broad.mit.edu;ucsc.edu 37 15 101971643 101971643 + Missense_Mutation SNP C A A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 PILRB 29990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99956460 99956460 + Nonsense_Mutation SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 PITPNM3 83394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6386893 6386893 + Silent SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 RAB23 51715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 57075110 57075110 + Silent SNP T T A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 RAPGEF3 10411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48143587 48143587 + Silent SNP C C T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 RHEB 6009 broad.mit.edu;hgsc.bcm.edu 37 7 151181869 151181869 + Missense_Mutation SNP A A T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39008078 39008078 + Silent SNP G G T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23904812 23904812 + Missense_Mutation SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 SLC25A25 114789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130865982 130865982 + Missense_Mutation SNP T T A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 SLC35A1 10559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 88210341 88210341 + Missense_Mutation SNP A A G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 SON 6651 hgsc.bcm.edu 37 21 34948697 34948697 + Frame_Shift_Del DEL A A - rs34373121 bycluster TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 SPG7 6687 hgsc.bcm.edu;ucsc.edu 37 16 89616909 89616910 + Frame_Shift_Ins INS - - A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228882779 228882779 + Nonsense_Mutation SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 SSNA1 8636 broad.mit.edu;hgsc.bcm.edu 37 9 140083619 140083619 + Missense_Mutation SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 SUGP2 10147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19129981 19129981 + Missense_Mutation SNP C C T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 TAF1 6872 broad.mit.edu;hgsc.bcm.edu 37 X 70602417 70602417 + Silent SNP T T C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 TAP2 6891 broad.mit.edu;hgsc.bcm.edu 37 6 32805899 32805899 + Silent SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 TBPL2 387332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55895569 55895569 + Silent SNP G G A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 TDRD6 221400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46657639 46657639 + Missense_Mutation SNP C C G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 THBS4 7060 hgsc.bcm.edu 37 5 79351734 79351734 + Missense_Mutation SNP C C T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 TMEM68 137695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 56652730 56652730 + Silent SNP T T C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 TSPYL1 7259 hgsc.bcm.edu;ucsc.edu 37 6 116600703 116600703 + Frame_Shift_Del DEL C C - novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191520 10191520 + Frame_Shift_Del DEL G G - novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 VPS13D 55187 broad.mit.edu;ucsc.edu 37 1 12321995 12321995 + Silent SNP G T T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 WNT8A 7478 hgsc.bcm.edu 37 5 137426309 137426309 + Missense_Mutation SNP C C A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106810965 106810965 + Silent SNP T T C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 ZNF318 24149 hgsc.bcm.edu;ucsc.edu 37 6 43307260 43307261 + Frame_Shift_Ins INS - - C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 ZNF808 388558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53058493 53058493 + Missense_Mutation SNP G G T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 C3orf58 205428 broad.mit.edu 37 3 143691275 143691275 + Nonsense_Mutation SNP C A A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 EEF1A1 1915 broad.mit.edu 37 6 74228230 74228230 + Silent SNP G T T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 FLJ36000 284124 broad.mit.edu 37 17 21904083 21904083 + RNA SNP C A A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 GRSF1 2926 broad.mit.edu 37 4 71690078 71690078 + Missense_Mutation SNP C G G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 KIAA0284 0 broad.mit.edu 37 14 105361169 105361169 + Silent SNP A C C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 LOC442421 0 broad.mit.edu 37 9 66500810 66500810 + RNA SNP G A A novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 MLLT3 4300 broad.mit.edu 37 9 20414343 20414343 + Silent SNP A G G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 PI4KAP1 728233 broad.mit.edu 37 22 20385733 20385733 + RNA SNP A G G rs402724 bycluster;byfrequency;by2hit2allele TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 RGPD4 285190 broad.mit.edu 37 2 108489172 108489172 + Missense_Mutation SNP G C C novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 Unknown 0 broad.mit.edu 37 15 22440773 22440773 + Missense_Mutation SNP C T T novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8 Unknown 0 broad.mit.edu 37 9 21278188 21278188 + RNA SNP C G G novel TCGA-CJ-5686-01A-11D-1669-08 TCGA-CJ-5686-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 695e2a72-6b97-4fa1-9f57-d7c6e10438ee 643a505e-ab7b-4885-a5ba-ed890cf80da8