Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID A1BG 1 broad.mit.edu 37 19 58863915 58863915 + Nonsense_Mutation SNP A T T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ANXA10 11199 broad.mit.edu;ucsc.edu 37 4 169085402 169085402 + Silent SNP T C C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ARHGAP23 57636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36619105 36619105 + Missense_Mutation SNP G G A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ATRX 546 broad.mit.edu 37 X 76777788 76777788 + Missense_Mutation SNP G T T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e BCCIP 56647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 127520153 127520153 + Silent SNP T T G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e C1orf129 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 170914714 170914714 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e C2orf67 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 210889861 210889861 + Nonsense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CCDC45 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62512882 62512882 + Missense_Mutation SNP C C A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CCL27 10850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34662409 34662409 + Missense_Mutation SNP G G T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CDC7 8317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 91978791 91978791 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CHMP7 91782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 23116262 23116262 + Silent SNP G G A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CPEB1 64506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83221251 83221251 + Missense_Mutation SNP G G C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CPXM2 119587 broad.mit.edu 37 10 125651046 125651046 + Missense_Mutation SNP C T T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CROCCL1 0 broad.mit.edu 37 1 16944979 16944981 + RNA DEL AAG - - rs142983965 TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 AAG AAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CSDA 8531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10865871 10865871 + Missense_Mutation SNP G G A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e CSNK1G3 1456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 122923847 122923847 + Missense_Mutation SNP G G T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e DENND2A 27147 broad.mit.edu 37 7 140301430 140301430 + Silent SNP A C C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11583161 11583161 + Missense_Mutation SNP G G T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e EPM2A 7957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 145948647 145948647 + Missense_Mutation SNP G G T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ERCC3 2071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128036918 128036918 + Nonsense_Mutation SNP C C A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ERCC6L 54821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71426172 71426172 + Silent SNP T T A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e EXOC7 23265 broad.mit.edu 37 17 74093949 74093949 + Missense_Mutation SNP G A A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e FAM57B 83723 broad.mit.edu 37 16 30036624 30036624 + Silent SNP G A A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e FAM71C 196472 broad.mit.edu;ucsc.edu 37 12 100042248 100042248 + Missense_Mutation SNP G C C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e FN1 2335 broad.mit.edu;ucsc.edu 37 2 216274775 216274775 + Missense_Mutation SNP G C C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e FRAS1 80144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79420893 79420893 + Missense_Mutation SNP A A C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e G2E3 55632 broad.mit.edu;hgsc.bcm.edu 37 14 31074726 31074726 + Missense_Mutation SNP T T G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e GLDN 342035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51692438 51692438 + Missense_Mutation SNP T T A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e GPC3 2719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132834052 132834052 + Missense_Mutation SNP C C A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e GPD2 2820 broad.mit.edu;ucsc.edu 37 2 157426664 157426664 + Silent SNP G A A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e GPX4 2879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1106419 1106419 + Silent SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e GPX4 2879 broad.mit.edu;ucsc.edu 37 19 1106418 1106418 + Missense_Mutation SNP G C C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e HLA-C 3107 hgsc.bcm.edu 37 6 31238126 31238126 + Silent SNP G G A rs79295030 TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 185985179 185985179 + Nonsense_Mutation SNP G G T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e HTR1E 3354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87725923 87725923 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e KIAA0913 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75545700 75545700 + Missense_Mutation SNP T T G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e KIF21B 23046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200943295 200943295 + Silent SNP G G A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e KRT4 3851 hgsc.bcm.edu 37 12 53207602 53207603 + Frame_Shift_Ins INS - - G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e LLGL1 3996 broad.mit.edu;ucsc.edu 37 17 18141525 18141526 + Frame_Shift_Ins INS - A A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e LMO7 4008 hgsc.bcm.edu;ucsc.edu 37 13 76427480 76427480 + Frame_Shift_Del DEL C C - novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e MAGEB10 139422 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 27840135 27840135 + Missense_Mutation SNP C C A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e MCM7 4176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99695276 99695276 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e MICAL2 9645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 12278355 12278355 + Silent SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e MIR766 768218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118780702 118780702 + RNA SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e MRPL48 51642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73555925 73555925 + Missense_Mutation SNP A A G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e MUC21 394263 hgsc.bcm.edu 37 6 30954552 30954552 + Silent SNP C C T rs144720609 byfrequency TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e NENF 29937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 212619210 212619210 + Silent SNP G G A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e NUAK1 9891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 106466600 106466600 + Missense_Mutation SNP T T C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e OR6F1 343169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247875599 247875599 + Missense_Mutation SNP G G T rs144440883 byfrequency;alternate_allele TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e PCDHB5 26167 broad.mit.edu;hgsc.bcm.edu 37 5 140517263 140517263 + Missense_Mutation SNP C C A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e PCGF2 7703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36892363 36892363 + Missense_Mutation SNP A A T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e PIP5K1A 8394 hgsc.bcm.edu 37 1 151206687 151206687 + Frame_Shift_Del DEL C C - novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e PKNOX1 5316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 44427621 44427621 + Silent SNP A A G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e PPPDE1 0 broad.mit.edu 37 1 244868992 244868992 + Silent SNP A G G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e PSG5 5673 broad.mit.edu;hgsc.bcm.edu 37 19 43680096 43680096 + Missense_Mutation SNP G G C novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e PTPRQ 374462 hgsc.bcm.edu 37 12 80943506 80943523 + In_Frame_Del DEL TGAAACAGGTAACTAACG TGAAACAGGTAACTAACG - rs141686707 by1000genomes TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 TGAAACAGGTAACTAACG TGAAACAGGTAACTAACG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e RAB4B 53916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41286335 41286335 + Missense_Mutation SNP G G A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e RAB4B 53916 broad.mit.edu;ucsc.edu 37 19 41286350 41286350 + Missense_Mutation SNP G T T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e SETBP1 26040 broad.mit.edu;hgsc.bcm.edu 37 18 42530495 42530495 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e SETD2 29072 broad.mit.edu;ucsc.edu 37 3 47079269 47079269 + Splice_Site SNP T A A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T T A T T Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e SLC12A4 6560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67983803 67983803 + Missense_Mutation SNP C C G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e SLC12A4 6560 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67983804 67983804 + Missense_Mutation SNP C C A rs184951084 by1000genomes TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16255505 16255505 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158609713 158609713 + Missense_Mutation SNP G G A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e SSH2 85464 hgsc.bcm.edu;ucsc.edu 37 17 27958639 27958642 + Frame_Shift_Del DEL CTGA CTGA - novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 CTGA CTGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 AGAGCTCC AGAGCTCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e SUN5 140732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31572986 31572986 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e TMEM150A 129303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85828190 85828190 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e TYW1 55253 broad.mit.edu 37 7 66582492 66582492 + Silent SNP C T T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e UHRF1 29128 broad.mit.edu;hgsc.bcm.edu 37 19 4950899 4950899 + Missense_Mutation SNP A A G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ULK4 54986 hgsc.bcm.edu 37 3 41860985 41860985 + Frame_Shift_Del DEL T T - novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e UNC13A 23025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17756598 17756598 + Silent SNP G G A novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e UNC45B 146862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33495265 33495265 + Missense_Mutation SNP T T G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e Unknown 0 broad.mit.edu 37 1 91296515 91296515 + RNA DEL A - - novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e Unknown 0 broad.mit.edu 37 7 136848967 136848967 + RNA SNP C T T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e Unknown 0 broad.mit.edu 37 8 64698000 64698000 + RNA DEL C - - novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e WAS 7454 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48544489 48544489 + Silent SNP A A T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e WNK3 65267 hgsc.bcm.edu;ucsc.edu 37 X 54276546 54276546 + Nonsense_Mutation SNP G G T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e YIPF4 84272 broad.mit.edu;ucsc.edu 37 2 32517399 32517399 + Silent SNP A G G novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75248651 75248651 + Silent SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ZNF429 353088 broad.mit.edu;hgsc.bcm.edu 37 19 21720845 21720845 + Missense_Mutation SNP A A T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ZNF512B 57473 broad.mit.edu;hgsc.bcm.edu 37 20 62596015 62596015 + Silent SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e ZNF75D 7626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 134427883 134427883 + Missense_Mutation SNP C C T novel TCGA-A3-3358-01A-01D-1534-10 TCGA-A3-3358-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fd42afa7-6f0f-48e8-a947-bb9c9f4770ef a7a2b9c5-641d-4644-99d2-a4beeac3aa0e