Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC5 10057 hgsc.bcm.edu 37 3 183665257 183665257 + Frame_Shift_Del DEL A A - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ABCG4 64137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119031335 119031335 + Missense_Mutation SNP C C A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ABHD15 116236 broad.mit.edu 37 17 27893483 27893483 + Missense_Mutation SNP C G G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ADAMTS1 9510 hgsc.bcm.edu;ucsc.edu 37 21 28213405 28213407 + In_Frame_Del DEL CAT CAT - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 CAT CAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 AFAP1L2 84632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116082996 116082996 + Missense_Mutation SNP T T G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 AFF4 27125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132270528 132270528 + Missense_Mutation SNP T T C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ALKBH8 91801 hgsc.bcm.edu;ucsc.edu 37 11 107375782 107375782 + Frame_Shift_Del DEL T T - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 AOX1 316 hgsc.bcm.edu;ucsc.edu 37 2 201533350 201533350 + Frame_Shift_Del DEL T T - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52442521 52442521 + Missense_Mutation SNP T T C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 C7orf23 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 86826037 86826037 + Missense_Mutation SNP A A T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CAND1 55832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 67700071 67700071 + Missense_Mutation SNP G G A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CAPZA2 830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116556165 116556165 + Missense_Mutation SNP A A T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CARD11 84433 broad.mit.edu;ucsc.edu 37 7 2954892 2954892 + Missense_Mutation SNP G C C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CCDC108 255101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219900064 219900064 + Missense_Mutation SNP T T G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CCDC40 55036 broad.mit.edu 37 17 78039368 78039368 + Missense_Mutation SNP C G G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CCDC40 55036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78058619 78058619 + Silent SNP C C T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64211271 64211273 + In_Frame_Del DEL GGG GGG - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 GGG GGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CHD3 1107 broad.mit.edu;ucsc.edu 37 17 7805978 7805978 + Nonsense_Mutation SNP C A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CLEC9A 283420 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10217396 10217396 + Missense_Mutation SNP G G C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CTNND2 1501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 11018139 11018139 + Missense_Mutation SNP G G T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CYP21A2 1589 broad.mit.edu 37 6 32006526 32006526 + Missense_Mutation SNP C A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 CYP4A11 1579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47402390 47402390 + Nonsense_Mutation SNP A A C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 DDC 1644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 50611748 50611748 + Missense_Mutation SNP C C G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 DPPA2 151871 hgsc.bcm.edu;ucsc.edu 37 3 109031461 109031461 + Frame_Shift_Del DEL C C - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 DYRK2 8445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 68052356 68052356 + Missense_Mutation SNP A A C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ERCC1 2067 hgsc.bcm.edu 37 19 45916986 45916986 + Silent SNP G G T rs3212976 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 EVI5 7813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93089777 93089777 + Missense_Mutation SNP C C T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 EWSR1 2130 broad.mit.edu;ucsc.edu 37 22 29668371 29668371 + Missense_Mutation SNP A G G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 FAM183A 440585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43616487 43616487 + Silent SNP A A C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 FAM71F1 84691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128358917 128358917 + Missense_Mutation SNP T T C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 GABRG2 2566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 161524855 161524855 + Missense_Mutation SNP A A G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 GALNT5 11227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158114785 158114785 + Missense_Mutation SNP G G A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 GEMIN5 25929 hgsc.bcm.edu;ucsc.edu 37 5 154287300 154287300 + Frame_Shift_Del DEL A A - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 HOOK3 84376 broad.mit.edu;ucsc.edu 37 8 42828459 42828459 + Missense_Mutation SNP G A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160468352 160468352 + Missense_Mutation SNP G G A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ITGA6 3655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 173352130 173352130 + Silent SNP G G A rs141344340 TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 KARS 3735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 75678248 75678248 + Silent SNP G G A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 KCNT2 343450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196250087 196250087 + Missense_Mutation SNP C C A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 KDM4D 55693 broad.mit.edu;hgsc.bcm.edu 37 11 94730799 94730799 + Missense_Mutation SNP A A G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 KIAA0564 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42263606 42263606 + Missense_Mutation SNP G G T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 KIF20B 9585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91469205 91469205 + Missense_Mutation SNP T T G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 KIF21B 23046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200960791 200960791 + Silent SNP G G T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 LOC441666 441666 broad.mit.edu 37 10 42833429 42833429 + RNA SNP A G G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 LRRC8D 55144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 90400298 90400298 + Frame_Shift_Del DEL T T - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MBD6 114785 broad.mit.edu;ucsc.edu 37 12 57921633 57921633 + Missense_Mutation SNP G T T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MED14 9282 broad.mit.edu;hgsc.bcm.edu 37 X 40568603 40568603 + Missense_Mutation SNP T T G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MIR196A2 406973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54385596 54385596 + RNA SNP C C T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MIR520D 574482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54223429 54223429 + RNA SNP G G T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MME 4311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154856020 154856020 + Missense_Mutation SNP G G T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MME 4311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 154856021 154856021 + Missense_Mutation SNP C C G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MST1R 4486 broad.mit.edu 37 3 49940468 49940476 + In_Frame_Del DEL CCTTGCTCA - - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 CCTTGCTCA CCTTGCTCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MTMR12 54545 broad.mit.edu;hgsc.bcm.edu 37 5 32242165 32242165 + Missense_Mutation SNP A A G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MUC2 4583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1097746 1097746 + Missense_Mutation SNP C C T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MUC4 4585 broad.mit.edu 37 3 195507059 195507059 + Missense_Mutation SNP T C C rs76367261 TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 MYO5B 4645 broad.mit.edu 37 18 47363917 47363917 + Missense_Mutation SNP A G G rs138128932 TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 NAT1 9 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 18079815 18079815 + Missense_Mutation SNP A A T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 NBEA 26960 broad.mit.edu 37 13 35738588 35738588 + Missense_Mutation SNP A G G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 NEFH 4744 hgsc.bcm.edu 37 22 29885580 29885581 + In_Frame_Ins INS - - AGGCCAAGTCCCCTGAGA novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 NEK10 152110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 27332981 27332982 + Frame_Shift_Ins INS - - AA novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 OR1F1 4992 hgsc.bcm.edu;ucsc.edu 37 16 3254418 3254418 + Missense_Mutation SNP C C A rs61731432 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 OR8B12 219858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124413242 124413242 + Missense_Mutation SNP G G T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PCDHA12 56137 broad.mit.edu 37 5 140256584 140256584 + Silent SNP G A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PIAS1 8554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68445966 68445966 + Silent SNP C C T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PKD1 5310 broad.mit.edu;hgsc.bcm.edu 37 16 2158399 2158399 + Missense_Mutation SNP C C A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PKD1 5310 broad.mit.edu;hgsc.bcm.edu 37 16 2158400 2158400 + Silent SNP C C A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PKHD1L1 93035 hgsc.bcm.edu;ucsc.edu 37 8 110523095 110523095 + Frame_Shift_Del DEL G G - novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PLXNB1 5364 broad.mit.edu 37 3 48463743 48463743 + Missense_Mutation SNP G T T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PRPF19 27339 broad.mit.edu;ucsc.edu 37 11 60658678 60658678 + Missense_Mutation SNP G A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PTPRG 5793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 62258667 62258667 + Missense_Mutation SNP C C G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 PTPRM 5797 broad.mit.edu;ucsc.edu 37 18 8113697 8113697 + Silent SNP T A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 RALGAPA2 57186 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 20493446 20493446 + Missense_Mutation SNP A A C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 RBM23 55147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23371499 23371499 + Missense_Mutation SNP C C A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 RFTN1 23180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 16368331 16368331 + Missense_Mutation SNP T T C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 RINL 126432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39362295 39362295 + Missense_Mutation SNP T T G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 RNF213 57674 broad.mit.edu 37 17 78337081 78337081 + Silent SNP C G G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 RNF213 57674 broad.mit.edu;hgsc.bcm.edu 37 17 78337077 78337077 + Missense_Mutation SNP A A C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 SCP2 6342 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53516318 53516318 + Missense_Mutation SNP T T A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 SEMA4F 10505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74902021 74902021 + Silent SNP G G T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 SLC18A3 6572 broad.mit.edu;ucsc.edu 37 10 50819157 50819157 + Missense_Mutation SNP T G G rs142721677 alternate_allele TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 SPC25 57405 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 169745777 169745777 + Missense_Mutation SNP T T G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 SPHKAP 80309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228883640 228883640 + Missense_Mutation SNP T T C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 SRSF11 9295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70694139 70694139 + Missense_Mutation SNP T T G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 STX2 2054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 131311785 131311785 + Missense_Mutation SNP C C G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 SYTL5 94122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 37984722 37984722 + Missense_Mutation SNP C C A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 TBC1D3P2 440452 broad.mit.edu 37 17 60342432 60342432 + RNA SNP T C C rs62069085 byfrequency TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 TSGA10 80705 broad.mit.edu;hgsc.bcm.edu 37 2 99725301 99725301 + Missense_Mutation SNP C C T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 TSPAN32 10077 hgsc.bcm.edu;ucsc.edu 37 11 2329985 2329985 + Missense_Mutation SNP T T A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179582267 179582267 + Missense_Mutation SNP G G A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 UGT1A7 54577 broad.mit.edu 37 2 234591037 234591037 + Missense_Mutation SNP G A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 UGT1A7 54577 broad.mit.edu;hgsc.bcm.edu 37 2 234591142 234591142 + Missense_Mutation SNP C C G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 URB2 9816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229773365 229773365 + Missense_Mutation SNP G G A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 VHL 7428 hgsc.bcm.edu 37 3 10183646 10183646 + Missense_Mutation SNP G G A novel TCGA-AK-3451-01A-02W-1244-10 TCGA-AK-3451-10A-01W-1244-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 5a465db8-051b-4d67-960b-5adc49b55fd9 a3aaf8f7-1dee-45f5-81da-6fceecc116c8 VHL 7428 hgsc.bcm.edu 37 3 10183735 10183735 + Frame_Shift_Del DEL G G - novel TCGA-AK-3451-01A-02W-1244-10 TCGA-AK-3451-10A-01W-1244-10 G G G - G G Unknown Valid Somatic Phase_I WXS PacBio . . Illumina MiSeq 5a465db8-051b-4d67-960b-5adc49b55fd9 a3aaf8f7-1dee-45f5-81da-6fceecc116c8 XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 167760143 167760143 + Missense_Mutation SNP G G T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ZDHHC5 25921 broad.mit.edu;ucsc.edu 37 11 57440598 57440598 + Missense_Mutation SNP C A A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu 37 1 35578967 35578967 + Silent SNP G G A novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ZNF224 7767 broad.mit.edu;hgsc.bcm.edu 37 19 44610924 44610924 + Missense_Mutation SNP A A G novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ZNF235 9310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44792129 44792129 + Missense_Mutation SNP A A T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1 ZNF641 121274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48737147 48737147 + Missense_Mutation SNP C C T novel TCGA-AK-3451-01A-02D-1251-10 TCGA-AK-3451-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e77e3d0-35a7-4555-a0b4-236630d71f61 f9333599-d814-44d9-a58f-9c6fb78b15d1