Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADCK1 57143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78365584 78365584 + Missense_Mutation SNP C C G novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 AGAP6 414189 hgsc.bcm.edu 37 10 51768675 51768676 + Frame_Shift_Del DEL AA AA - rs113234838 TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 AMOT 154796 broad.mit.edu 37 X 112048309 112048309 + Missense_Mutation SNP G C C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 BTG4 54766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111368759 111368759 + Missense_Mutation SNP A A G novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 BTNL8 79908 broad.mit.edu;hgsc.bcm.edu 37 5 180377117 180377117 + Missense_Mutation SNP G G A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 C1orf91 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32682463 32682463 + Silent SNP A A T novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 C2orf39 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26647271 26647271 + Missense_Mutation SNP C C A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 CCDC144A 9720 broad.mit.edu 37 17 16664760 16664760 + Missense_Mutation SNP G A A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 CNDP1 84735 broad.mit.edu 37 18 72234669 72234669 + Splice_Site SNP G T T novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 CYB5R1 51706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202932810 202932810 + Missense_Mutation SNP G G C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 ELL2 22936 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 95242241 95242241 + Missense_Mutation SNP C C A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 EPHX1 2052 broad.mit.edu 37 1 226032308 226032308 + Missense_Mutation SNP A G G novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 FRMPD2 143162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 49420118 49420118 + Missense_Mutation SNP T T A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 GTF3C4 9329 broad.mit.edu 37 9 135555166 135555166 + Silent SNP A G G novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 HAUS4 54930 hgsc.bcm.edu;ucsc.edu 37 14 23421803 23421806 + Frame_Shift_Del DEL GTGA GTGA - novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 GTGA GTGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 HEATR1 55127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 236740185 236740185 + Missense_Mutation SNP C C A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 HERC2 8924 broad.mit.edu;hgsc.bcm.edu 37 15 28515959 28515959 + Missense_Mutation SNP G G A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 IPP 3652 hgsc.bcm.edu 37 1 46211923 46211924 + Frame_Shift_Ins INS - - C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 KDM5C 8242 broad.mit.edu;ucsc.edu 37 X 53244975 53244975 + Splice_Site SNP A G G novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 MUC4 4585 broad.mit.edu 37 3 195510108 195510108 + Silent SNP G A A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 NSMCE2 286053 hgsc.bcm.edu 37 8 126114663 126114664 + Frame_Shift_Ins INS - - A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 OR2T27 403239 hgsc.bcm.edu 37 1 248813651 248813653 + In_Frame_Del DEL AGA AGA - rs113853731 TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 AGA AGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52620525 52620525 + Frame_Shift_Del DEL A A - novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57329187 57329187 + Silent SNP G G A rs142177720 by1000genomes TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PLIN2 123 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 19116637 19116637 + Missense_Mutation SNP G G A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PLXNA2 5362 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 208215470 208215470 + Missense_Mutation SNP T T C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PLXNC1 10154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 94673352 94673352 + Missense_Mutation SNP A A C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PPFIBP2 8495 hgsc.bcm.edu 37 11 7661048 7661050 + In_Frame_Del DEL CTC CTC - rs143023559 by1000genomes TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PRG4 23572 hgsc.bcm.edu 37 1 186275463 186275463 + Missense_Mutation SNP G G C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PRSS45 377047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 46783933 46783933 + Missense_Mutation SNP C C A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 PTPRCAP 5790 broad.mit.edu 37 11 67203476 67203476 + Missense_Mutation SNP G T T novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 RIOK3 8780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21043937 21043937 + Silent SNP T T C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 RPL34 6164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 109543328 109543328 + Missense_Mutation SNP G G A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 SLC13A4 26266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135370372 135370372 + Silent SNP C C T novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 TCL6 27004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 96129842 96129842 + RNA SNP T T C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 TECTA 7007 hgsc.bcm.edu;ucsc.edu 37 11 121030869 121030870 + Frame_Shift_Ins INS - - AT novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 TIGD6 81789 broad.mit.edu;ucsc.edu 37 5 149375454 149375454 + Missense_Mutation SNP T C C novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 TNFSF15 9966 hgsc.bcm.edu;ucsc.edu 37 9 117552995 117552995 + Missense_Mutation SNP T T A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 UBE2R2 54926 broad.mit.edu;ucsc.edu 37 9 33817901 33817901 + Missense_Mutation SNP C T T novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 USP28 57646 broad.mit.edu;ucsc.edu 37 11 113701632 113701632 + Silent SNP C A A novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188203 10188205 + In_Frame_Del DEL CTT CTT - novel TCGA-AK-3458-01A-01D-1501-10 TCGA-AK-3458-10A-01D-1501-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0198f3c3-78f2-4c19-90d5-c77b74044ca2 30e43131-d7aa-407d-9bed-28ae34db1b68