Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AAK1 22848 broad.mit.edu;ucsc.edu 37 2 69704092 69704092 + Missense_Mutation SNP A G G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ACACA 31 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35640308 35640308 + Splice_Site SNP T T C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ACTG1 71 broad.mit.edu 37 17 79479120 79479120 + Missense_Mutation SNP C T T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ADAMTS20 80070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 43769952 43769952 + Splice_Site SNP C C T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ADAMTS6 11174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64483842 64483842 + Splice_Site SNP C C G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ADCK2 90956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 140387007 140387007 + Missense_Mutation SNP T T A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ATP13A4 84239 broad.mit.edu;ucsc.edu 37 3 193158423 193158423 + Missense_Mutation SNP A C C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f AUP1 550 broad.mit.edu;ucsc.edu 37 2 74754424 74754424 + Missense_Mutation SNP T C C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f AVIL 10677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58202005 58202005 + Missense_Mutation SNP A A G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f BCL9 607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 147096204 147096204 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f BRWD1 54014 broad.mit.edu;ucsc.edu 37 21 40572254 40572254 + Silent SNP A G G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f BUB3 9184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 124917322 124917322 + Missense_Mutation SNP A A G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f C10orf47 0 broad.mit.edu;hgsc.bcm.edu 37 10 11894170 11894170 + Silent SNP C C T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f C19orf75 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51767348 51767348 + Missense_Mutation SNP G G T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f CCAR1 55749 hgsc.bcm.edu;ucsc.edu 37 10 70520853 70520857 + Frame_Shift_Del DEL TAAAG TAAAG - novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 TAAAG TAAAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f CD1E 913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158324301 158324301 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f CD8A 925 hgsc.bcm.edu 37 2 87015623 87015623 + RNA SNP G G A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f CDAN1 146059 broad.mit.edu;hgsc.bcm.edu 37 15 43021465 43021465 + Silent SNP G G A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f CEP110 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123870184 123870184 + Nonsense_Mutation SNP A A T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f CLTC 1213 broad.mit.edu;ucsc.edu 37 17 57754361 57754361 + Missense_Mutation SNP T C C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107929324 107929324 + Missense_Mutation SNP G G T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f CTSL1 1514 broad.mit.edu;hgsc.bcm.edu 37 9 90343025 90343026 + Frame_Shift_Del DEL AC AC - novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f DIP2C 22982 broad.mit.edu;hgsc.bcm.edu 37 10 375486 375486 + Missense_Mutation SNP G G T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51741365 51741365 + Missense_Mutation SNP A A G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51839582 51839582 + Missense_Mutation SNP C C G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f DNAH8 1769 hgsc.bcm.edu;ucsc.edu 37 6 38957910 38957910 + Frame_Shift_Del DEL C C - novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14736333 14736333 + Missense_Mutation SNP T T C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ERF 2077 broad.mit.edu;hgsc.bcm.edu 37 19 42753474 42753474 + Frame_Shift_Del DEL G G - novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f F8 2157 broad.mit.edu;ucsc.edu 37 X 154129670 154129670 + Nonsense_Mutation SNP G A A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f FBLN1 2192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45928965 45928965 + Missense_Mutation SNP G G T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f FLYWCH1 84256 hgsc.bcm.edu;ucsc.edu 37 16 2983285 2983286 + Frame_Shift_Del DEL CA CA - novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f GLRA2 2742 broad.mit.edu;ucsc.edu 37 X 14748581 14748581 + Missense_Mutation SNP C T T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f GRAMD1B 57476 hgsc.bcm.edu 37 11 123480598 123480599 + Frame_Shift_Ins INS - - C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f GRIA2 2891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 158282180 158282180 + Silent SNP A A C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f HCLS1 3059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121366274 121366274 + Missense_Mutation SNP T T G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ITPRIP 85450 hgsc.bcm.edu 37 10 106074435 106074435 + Missense_Mutation SNP G G A rs145628846 alternate_allele TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f KCNG3 170850 hgsc.bcm.edu;ucsc.edu 37 2 42671444 42671444 + Missense_Mutation SNP A A G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f KCTD12 115207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 77459423 77459423 + Silent SNP C C G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f KLHL15 80311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24007140 24007140 + Missense_Mutation SNP G G T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f KLHL7 55975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23183605 23183605 + Missense_Mutation SNP C C G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f LILRA2 11027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55085805 55085805 + Silent SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f MARCH1 55016 broad.mit.edu;ucsc.edu 37 4 164450028 164450028 + Missense_Mutation SNP G T T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f MED12L 116931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150874118 150874118 + Splice_Site SNP G G T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f MST1P2 11209 broad.mit.edu 37 1 16974277 16974277 + RNA SNP A C C rs4661885 TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f MTOR 2475 broad.mit.edu;ucsc.edu 37 1 11187799 11187799 + Missense_Mutation SNP T A A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f NAGS 162417 broad.mit.edu 37 17 42083124 42083124 + Silent SNP T C C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f NHLRC2 374354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115664580 115664580 + Missense_Mutation SNP C C G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f NHSL1 57224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 138753025 138753025 + Silent SNP C C T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f NTN4 59277 hgsc.bcm.edu;ucsc.edu 37 12 96107078 96107078 + Frame_Shift_Del DEL G G - novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f OCRL 4952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 128720994 128720994 + Nonsense_Mutation SNP C C T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f OPRM1 4988 broad.mit.edu;hgsc.bcm.edu 37 6 154412543 154412543 + Missense_Mutation SNP G G T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f OR3A2 4995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3181512 3181512 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f OR56A3 390083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5969272 5969272 + Silent SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f OTOF 9381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26684967 26684967 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52623124 52623124 + Frame_Shift_Del DEL T T - novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T T - T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f PCDH11X 27328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 91137907 91137907 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f PCDH9 5101 broad.mit.edu;ucsc.edu 37 13 67801923 67801923 + Missense_Mutation SNP G T T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f PFKP 5214 hgsc.bcm.edu 37 10 3172145 3172145 + Silent SNP C C T rs1052337 bycluster;byfrequency;by1000genomes TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f PLA2G4D 283748 broad.mit.edu;ucsc.edu 37 15 42386652 42386652 + Silent SNP C T T rs148416017 TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f PPP2R5A 5525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 212506854 212506854 + Missense_Mutation SNP T T A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f PRRG3 79057 broad.mit.edu;hgsc.bcm.edu 37 X 150869198 150869198 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f RBM19 9904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 114364985 114364985 + Silent SNP T T C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f RRP8 23378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6621799 6621800 + Frame_Shift_Ins INS - - T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f SCN7A 6332 broad.mit.edu;ucsc.edu 37 2 167289087 167289087 + Missense_Mutation SNP A T T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f SEC24D 9871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 119718966 119718966 + Splice_Site SNP C C T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f SERPINB11 89778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61390295 61390295 + Missense_Mutation SNP G G C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47144873 47144873 + Missense_Mutation SNP A A C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A A C A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f SLC13A3 64849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45192089 45192089 + Silent SNP G G A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f SLC15A5 729025 hgsc.bcm.edu;ucsc.edu 37 12 16410792 16410792 + Silent SNP G G A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f SPTLC2 9517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78045381 78045381 + Silent SNP G G A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f TEC 100124696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48148400 48148400 + Silent SNP A A T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f TMCC3 57458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 94975953 94975953 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f TMOD3 29766 broad.mit.edu 37 15 52213781 52213781 + RNA DEL C - - novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179622487 179622487 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f TYRO3 7301 hgsc.bcm.edu 37 15 41862436 41862436 + Splice_Site SNP A A G novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f UBA1 7317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 47062342 47062342 + Missense_Mutation SNP G G A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ULK4 54986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 41795894 41795895 + Frame_Shift_Ins INS - - A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f Unknown 0 broad.mit.edu 37 17 58511110 58511110 + RNA SNP C A A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f Unknown 0 broad.mit.edu 37 19 23329317 23329317 + RNA SNP C A A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f Unknown 0 broad.mit.edu 37 5 33162312 33162312 + RNA SNP C A A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f Unknown 0 broad.mit.edu 37 X 155252987 155252988 + In_Frame_Ins INS - CAGCACCAC CAGCACCAC novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f USP18 11274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 18643020 18643020 + Missense_Mutation SNP C C A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191469 10191469 + Splice_Site SNP A G G rs5030816 TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f VPS18 57617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41192166 41192166 + Missense_Mutation SNP C C T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f WASL 8976 broad.mit.edu 37 7 123332892 123332892 + Missense_Mutation SNP C A A novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ZBTB46 140685 broad.mit.edu;hgsc.bcm.edu 37 20 62407316 62407316 + Splice_Site SNP C C T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ZFAND2B 130617 broad.mit.edu;ucsc.edu 37 2 220072989 220072989 + Missense_Mutation SNP T C C novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ZNF570 148268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37975687 37975687 + Missense_Mutation SNP G G T novel TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f ZNF772 400720 hgsc.bcm.edu 37 19 57988666 57988667 + In_Frame_Ins INS - - GCC rs34678661 bycluster;by1000genomes TCGA-B0-4852-01A-01D-1501-10 TCGA-B0-4852-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 28dbeb57-c919-4f91-aa3c-7b8f3809011e b19198c1-7ef5-4673-bb17-fbdce6183d7f