Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AFF2 2334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 148035250 148035250 + Missense_Mutation SNP C C A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 ALAD 210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116154422 116154422 + Silent SNP G G T rs116243288 byfrequency;alternate_allele TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 ALAS2 212 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55039931 55039931 + Nonsense_Mutation SNP C C A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 ALMS1 7840 broad.mit.edu;hgsc.bcm.edu 37 2 73677725 73677725 + Silent SNP T T A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 ASTL 431705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96789864 96789864 + Nonsense_Mutation SNP C C A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108202714 108202714 + Nonsense_Mutation SNP A A T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 ATP6AP1L 92270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 81614047 81614047 + Missense_Mutation SNP G G T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52441262 52441262 + Missense_Mutation SNP A A C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 C11orf84 144097 broad.mit.edu 37 11 63586459 63586459 + Missense_Mutation SNP G A A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66479940 66479940 + Missense_Mutation SNP T T G novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 CHERP 10523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16630029 16630029 + Missense_Mutation SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 CLOCK 9575 broad.mit.edu;ucsc.edu 37 4 56314944 56314944 + Splice_Site SNP A G G novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 CLOCK 9575 broad.mit.edu;ucsc.edu 37 4 56314945 56314945 + Splice_Site SNP C A A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 COG6 57511 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 40268842 40268842 + Silent SNP A A G novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 CSPP1 79848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68084731 68084731 + Missense_Mutation SNP A A T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 CYP11B2 1585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 143994011 143994011 + Missense_Mutation SNP A A T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 DCAF4L1 285429 broad.mit.edu;ucsc.edu 37 4 41983927 41983927 + Missense_Mutation SNP A C C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 DNAH11 8701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21913067 21913067 + Silent SNP C C A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196642652 196642652 + Missense_Mutation SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 DOCK10 55619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225729384 225729384 + Missense_Mutation SNP A A C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 EPHA3 2042 hgsc.bcm.edu;ucsc.edu 37 3 89468448 89468448 + Frame_Shift_Del DEL A A - novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 EPS15L1 58513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16535940 16535940 + Missense_Mutation SNP T T C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 EYS 346007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 66205260 66205260 + Missense_Mutation SNP T T A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 FBLN2 2199 broad.mit.edu;ucsc.edu 37 3 13670697 13670697 + Missense_Mutation SNP G T T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 FLVCR2 55640 broad.mit.edu;hgsc.bcm.edu 37 14 76045408 76045408 + Silent SNP C C A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 GCLM 2730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94370100 94370100 + Silent SNP T T C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 GMCL1L 0 broad.mit.edu 37 5 177612983 177612983 + Missense_Mutation SNP G A A rs13169133 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 GZF1 64412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 23347703 23347703 + Silent SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 HIP1 3092 broad.mit.edu 37 7 75182782 75182782 + Missense_Mutation SNP G T T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 KIF4B 285643 broad.mit.edu;hgsc.bcm.edu 37 5 154396598 154396598 + Missense_Mutation SNP G G T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 LOC374491 0 broad.mit.edu 37 13 25161456 25161456 + RNA SNP C T T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 MAEL 84944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 166962002 166962002 + Silent SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 MIR450A1 554214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 133674458 133674458 + RNA SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 MLL3 58508 hgsc.bcm.edu;ucsc.edu 37 7 152012275 152012275 + Frame_Shift_Del DEL T T - novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 MTUS2 23281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 29600300 29600300 + Missense_Mutation SNP C C A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 MYOT 9499 broad.mit.edu;hgsc.bcm.edu 37 5 137213306 137213306 + Missense_Mutation SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 NAB1 4664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191550288 191550288 + Missense_Mutation SNP G G C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178098803 178098803 + Missense_Mutation SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 NR1H4 9971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100930297 100930297 + Missense_Mutation SNP C C G novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 OVGP1 5016 hgsc.bcm.edu 37 1 111957524 111957592 + In_Frame_Del DEL GGTCACAGACTGATGACCCACAGGGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA GGTCACAGACTGATGACCCACAGGGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA - novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 GGTCACAGACTGATGACCCACAGGGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA GGTCACAGACTGATGACCCACAGGGGTCAGGGTCTTTTCCCCAGGGGTCACAGACTGATAACCCACAGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu 37 1 144865887 144865887 + Missense_Mutation SNP G G C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 PIGG 54872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 515604 515604 + Missense_Mutation SNP T T A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 POLR2H 5437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184082991 184082991 + Silent SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 PSG3 5671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43228148 43228148 + Missense_Mutation SNP G G T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 RABEP2 79874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28916276 28916276 + Missense_Mutation SNP G G C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SALL1 6299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 51173795 51173795 + Missense_Mutation SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SDHAP1 255812 broad.mit.edu 37 3 195701417 195701417 + Silent SNP G C C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SDK2 54549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71357832 71357832 + Missense_Mutation SNP G G T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SEC61A2 55176 broad.mit.edu;hgsc.bcm.edu 37 10 12209851 12209851 + RNA SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SLC27A1 376497 broad.mit.edu;hgsc.bcm.edu 37 19 17611525 17611525 + Missense_Mutation SNP C C G novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SMARCE1 6605 broad.mit.edu;hgsc.bcm.edu 37 17 38798730 38798730 + Missense_Mutation SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SNAP91 9892 broad.mit.edu;ucsc.edu 37 6 84292066 84292066 + Frame_Shift_Del DEL C - - novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SPRY2 10253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 80911095 80911095 + Missense_Mutation SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SPSB1 80176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9415972 9415972 + Missense_Mutation SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SRSF4 6429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29481292 29481292 + Missense_Mutation SNP A A G rs111495066 TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 STK31 56164 broad.mit.edu 37 7 23802525 23802525 + Missense_Mutation SNP C T T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113241933 113241933 + Silent SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 TBC1D25 4943 broad.mit.edu;hgsc.bcm.edu 37 X 48403330 48403330 + Missense_Mutation SNP G G C novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 TCF21 6943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 134210722 134210722 + Missense_Mutation SNP C C A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 TEX13A 56157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 104463697 104463697 + Missense_Mutation SNP C C A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 TMPRSS11D 9407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68719845 68719845 + Nonsense_Mutation SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 TNPO1 3842 broad.mit.edu;hgsc.bcm.edu 37 5 72185719 72185719 + Missense_Mutation SNP C C G novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 TOR3A 64222 broad.mit.edu;hgsc.bcm.edu 37 1 179057211 179057211 + Missense_Mutation SNP T T G novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 TYK2 7297 broad.mit.edu;ucsc.edu 37 19 10463680 10463680 + Missense_Mutation SNP T G G novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 UIMC1 51720 broad.mit.edu;hgsc.bcm.edu 37 5 176402397 176402397 + Nonsense_Mutation SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 VHL 7428 broad.mit.edu 37 3 10183752 10183752 + Missense_Mutation SNP T A A rs5030803 alternate_allele TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I WXS Illumina Miseq Illumina GAIIx 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183753 10183753 + Silent SNP C C T novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 WDR64 128025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 241875161 241875161 + Silent SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17 ZNF655 79027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99170286 99170286 + Silent SNP G G A novel TCGA-B0-5097-01A-01D-1421-08 TCGA-B0-5097-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3af2978e-b892-4817-be05-39f020c06b5e 18771d6c-583c-4b5c-9a3f-1b5ff0c70a17