Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AGGF1 55109 broad.mit.edu 37 5 76348572 76348572 + Silent SNP T C C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 ALDH3A1 218 broad.mit.edu 37 17 19641666 19641666 + Silent SNP C T T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 ASAP2 8853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9484692 9484692 + Missense_Mutation SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108127062 108127062 + Missense_Mutation SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 ATM 472 broad.mit.edu;ucsc.edu 37 11 108115600 108115600 + Nonsense_Mutation SNP C T T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 C17orf75 64149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30660439 30660439 + Silent SNP T T C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 C7orf13 129790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156432294 156432294 + RNA SNP G G T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 C7orf13 129790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156432295 156432295 + RNA SNP A A T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CACNA1G 8913 hgsc.bcm.edu 37 17 48692779 48692787 + In_Frame_Del DEL ACTTGTGCA ACTTGTGCA - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 ACTTGTGCA ACTTGTGCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CAPZA1 829 broad.mit.edu;ucsc.edu 37 1 113192053 113192053 + Silent SNP A T T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CCDC102A 92922 broad.mit.edu 37 16 57552045 57552047 + In_Frame_Del DEL GCC - - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 GCC GCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CLMN 79789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 95688029 95688029 + Missense_Mutation SNP T T C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CLPTM1L 81037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1331925 1331925 + Missense_Mutation SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CNNM1 26507 broad.mit.edu;hgsc.bcm.edu 37 10 101151192 101151192 + Splice_Site SNP A A G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CNOT6 57472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179994125 179994125 + Missense_Mutation SNP T T C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CRAMP1L 57585 broad.mit.edu 37 16 1706867 1706867 + Frame_Shift_Del DEL G - - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CRB1 23418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197404477 197404477 + Missense_Mutation SNP C C A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CRYBB1 1414 hgsc.bcm.edu 37 22 27012238 27012239 + Frame_Shift_Ins INS - - C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 CTSA 5476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44521907 44521907 + Missense_Mutation SNP T T C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 DKFZp686A1627 0 broad.mit.edu 37 13 19625310 19625310 + RNA SNP G A A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76421493 76421493 + Missense_Mutation SNP T T C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 DNAH3 55567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21136611 21136611 + Nonsense_Mutation SNP G G C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 DNAJC1 64215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 22193512 22193512 + Frame_Shift_Del DEL T T - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 DOK7 285489 broad.mit.edu;ucsc.edu 37 4 3478155 3478155 + Missense_Mutation SNP T G G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 DPP4 1803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162902066 162902066 + Missense_Mutation SNP A A C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 EPB41L4B 54566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 112005948 112005948 + Silent SNP A A G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 ERAL1 26284 broad.mit.edu;ucsc.edu 37 17 27182269 27182269 + Missense_Mutation SNP T C C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 F5 2153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169528479 169528479 + Silent SNP T T C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 FAM46A 55603 broad.mit.edu 37 6 82461713 82461713 + Frame_Shift_Del DEL C - - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 GMFB 2764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 54948128 54948128 + Missense_Mutation SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 GPR124 25960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 37688398 37688398 + Missense_Mutation SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 HGC6.3 100128124 broad.mit.edu 37 6 168377135 168377135 + Silent SNP T C C rs75642682 alternate_allele TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 HIST1H1A 3024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 26017495 26017495 + Missense_Mutation SNP C C A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 IVL 3713 hgsc.bcm.edu;ucsc.edu 37 1 152882534 152882545 + In_Frame_Del DEL GCAGCAACAGCA GCAGCAACAGCA - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 GCAGCAACAGCA GCAGCAACAGCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 IVL 3713 hgsc.bcm.edu;ucsc.edu 37 1 152882546 152882547 + Frame_Shift_Ins INS - - T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 KCNK10 54207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 88658594 88658594 + Missense_Mutation SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 KIAA1751 85452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1888064 1888064 + Missense_Mutation SNP T T G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 KIF1A 547 broad.mit.edu;ucsc.edu 37 2 241662861 241662861 + Nonsense_Mutation SNP C T T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 LOC100125556 0 broad.mit.edu 37 3 125647387 125647387 + RNA SNP G A A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 LOC100125556 0 broad.mit.edu 37 3 125647396 125647396 + RNA SNP T C C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 LOC389333 0 broad.mit.edu 37 5 138728573 138728574 + Frame_Shift_Del DEL AT - - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 AT AT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 LOC389333 0 broad.mit.edu 37 5 138728579 138728579 + Frame_Shift_Del DEL G - - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 LOC389333 0 broad.mit.edu 37 5 138728583 138728584 + Frame_Shift_Ins INS - T T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 LOC441666 441666 broad.mit.edu 37 10 42833429 42833429 + RNA SNP A G G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 LOC442421 0 broad.mit.edu 37 9 66499770 66499770 + Missense_Mutation SNP G T T rs7850185 bycluster;by2hit2allele TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 LOC645332 0 broad.mit.edu 37 11 67560717 67560717 + Silent SNP G A A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MAP3K2 10746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128066283 128066283 + Frame_Shift_Del DEL G G - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MAPK14 1432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36043701 36043701 + Missense_Mutation SNP C C A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MARCH6 10299 broad.mit.edu;ucsc.edu 37 5 10407230 10407230 + Missense_Mutation SNP T C C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MFAP4 4239 hgsc.bcm.edu;ucsc.edu 37 17 19288733 19288734 + Frame_Shift_Del DEL AA AA - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MIR218-1 407000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 20529994 20529994 + RNA SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129906122 129906122 + Missense_Mutation SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9000513 9000513 + Missense_Mutation SNP G G C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MUC4 4585 broad.mit.edu 37 3 195509939 195509939 + Missense_Mutation SNP G T T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MUC4 4585 hgsc.bcm.edu 37 3 195506281 195506281 + Missense_Mutation SNP A A G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MUC4 4585 hgsc.bcm.edu 37 3 195506282 195506282 + Missense_Mutation SNP A A C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 MYH2 4620 broad.mit.edu;hgsc.bcm.edu 37 17 10429940 10429940 + Missense_Mutation SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 NFATC3 4775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68160480 68160480 + Frame_Shift_Del DEL A A - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 NPAT 4863 hgsc.bcm.edu;ucsc.edu 37 11 108056204 108056205 + Frame_Shift_Ins INS - - T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 ODZ3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 183714853 183714853 + Missense_Mutation SNP A A G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 OR5AR1 219493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56431824 56431824 + Silent SNP C C A rs144241394 alternate_allele TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PBRM1 55193 hgsc.bcm.edu 37 3 52678784 52678784 + Frame_Shift_Del DEL T T - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PCYOX1 51449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 70502693 70502693 + Missense_Mutation SNP G G T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PGAP1 80055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197777686 197777686 + Missense_Mutation SNP T T G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PIM3 415116 hgsc.bcm.edu;ucsc.edu 37 22 50356427 50356428 + Frame_Shift_Ins INS - - C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PKD1L3 342372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 71967417 71967417 + Missense_Mutation SNP A A G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PLIN4 729359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4510945 4510945 + Missense_Mutation SNP T T A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PLXNA4 91584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 131866156 131866156 + Missense_Mutation SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PMEPA1 56937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 56227136 56227136 + Missense_Mutation SNP C C G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PRAME 23532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 22893221 22893221 + Silent SNP A A C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PRUNE2 158471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79325303 79325303 + Silent SNP G G T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu 37 7 121637955 121637955 + Missense_Mutation SNP C C G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 RGS7 6000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 240969479 240969479 + Silent SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 RMND5A 64795 broad.mit.edu;hgsc.bcm.edu 37 2 86980658 86980658 + Silent SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 RP1 6101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55540593 55540593 + Missense_Mutation SNP T T G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 RRBP1 6238 broad.mit.edu 37 20 17640580 17640580 + Silent SNP T G G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 SI 6476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 164754179 164754179 + Missense_Mutation SNP T T G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 SIRPB1 10326 broad.mit.edu;hgsc.bcm.edu 37 20 1552666 1552666 + Missense_Mutation SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 SIRT1 23411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69651246 69651246 + Missense_Mutation SNP T T A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 SIRT1 23411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 69651247 69651247 + Missense_Mutation SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 SPAG17 200162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 118584465 118584465 + Frame_Shift_Del DEL T T - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 SREK1 140890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 65455077 65455077 + Missense_Mutation SNP C C G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 SUPT3H 8464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44921067 44921067 + Missense_Mutation SNP G G C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 SUPT5H 6829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39965287 39965287 + Nonsense_Mutation SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TAS2R39 259285 hgsc.bcm.edu;ucsc.edu 37 7 142881197 142881197 + Frame_Shift_Del DEL C C - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TAS2R43 259289 hgsc.bcm.edu 37 12 11244067 11244068 + Frame_Shift_Ins INS - - TT novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TAS2R43 259289 hgsc.bcm.edu 37 12 11244071 11244072 + Frame_Shift_Del DEL CC CC - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 CC CC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TCHH 7062 broad.mit.edu;ucsc.edu 37 1 152083904 152083904 + Missense_Mutation SNP T C C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TGFBI 7045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135382106 135382106 + Silent SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TGFBI 7045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135382107 135382107 + Silent SNP C C T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TLE3 7090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 70351055 70351055 + Missense_Mutation SNP A A T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TMC1 117531 hgsc.bcm.edu;ucsc.edu 37 9 75309453 75309471 + In_Frame_Del DEL GTTTAGGTGAAGAGGAAGA GTTTAGGTGAAGAGGAAGA - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 GTTTAGGTGAAGAGGAAGA GTTTAGGTGAAGAGGAAGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TMEM229A 730130 broad.mit.edu 37 7 123672832 123672832 + Missense_Mutation SNP G T T novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 TOP1 7150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39741521 39741521 + Missense_Mutation SNP A A G novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 UNC45B 146862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33477188 33477188 + Silent SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 UNC80 285175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 210640619 210640619 + Missense_Mutation SNP G G C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 Unknown 0 broad.mit.edu 37 15 85121557 85121557 + RNA DEL A - - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 UQCRFS1 7386 broad.mit.edu 37 19 29699033 29699033 + Missense_Mutation SNP T C C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191558 10191558 + Missense_Mutation SNP T T C novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 WDR25 79446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 100934461 100934461 + Missense_Mutation SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 XIRP1 165904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39227553 39227553 + Frame_Shift_Del DEL G G - novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 ZNF845 91664 broad.mit.edu;hgsc.bcm.edu 37 19 53856730 53856730 + Silent SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306 ZNF845 91664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53856702 53856702 + Missense_Mutation SNP G G A novel TCGA-B0-5703-01A-11D-1534-10 TCGA-B0-5703-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 963400a2-d939-41a5-8c42-9fc3a04b8362 56994dd1-cfd6-4939-8c18-bbc52a633306