Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61835269 61835269 + Silent SNP C C T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 ANKRD32 84250 broad.mit.edu 37 5 94014548 94014548 + Silent SNP A G G novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 ATPAF2 91647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17929649 17929649 + Missense_Mutation SNP C C T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 BCORL1 63035 hgsc.bcm.edu 37 X 129149054 129149054 + Missense_Mutation SNP A A G novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 BMP2K 55589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79832708 79832708 + Missense_Mutation SNP A A G novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 CASP8AP2 9994 hgsc.bcm.edu;ucsc.edu 37 6 90577024 90577035 + In_Frame_Del DEL AAGACTCCAGAG AAGACTCCAGAG - novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 AAGACTCCAGAG AAGACTCCAGAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 CELA3A 10136 hgsc.bcm.edu 37 1 22333988 22333988 + Missense_Mutation SNP T T G rs112024506 TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 COL17A1 1308 hgsc.bcm.edu 37 10 105816869 105816895 + In_Frame_Del DEL GCCACCAACACCGCCACCTCCTCCACT GCCACCAACACCGCCACCTCCTCCACT - novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 GCCACCAACACCGCCACCTCCTCCACT GCCACCAACACCGCCACCTCCTCCACT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 CSPG4 1464 hgsc.bcm.edu 37 15 75981842 75981854 + Frame_Shift_Del DEL CCTCCAGCACCAG CCTCCAGCACCAG - novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 CCTCCAGCACCAG CCTCCAGCACCAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 CUBN 8029 broad.mit.edu 37 10 16919092 16919092 + Silent SNP A G G novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 FGD1 2245 broad.mit.edu 37 X 54475272 54475272 + Silent SNP C T T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 GLI3 2737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 42116424 42116424 + Missense_Mutation SNP G G A novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 GMPR 2766 hgsc.bcm.edu 37 6 16295417 16295418 + Frame_Shift_Ins INS - - C novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 IARS 3376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95012199 95012199 + Missense_Mutation SNP T T A novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 IARS 3376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95012201 95012201 + Missense_Mutation SNP A A G novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 LGR4 55366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 27390552 27390552 + Missense_Mutation SNP G G A novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 LOC96610 96610 broad.mit.edu 37 22 22724315 22724315 + RNA SNP G C C novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 MAP4K3 8491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39519948 39519948 + Nonsense_Mutation SNP C C A novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 MBP 4155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 74728852 74728852 + Missense_Mutation SNP A A G novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 NFXL1 152518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47850290 47850290 + Missense_Mutation SNP C C T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 PPARG 5468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 12422837 12422837 + Silent SNP G G A novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 PPP2R2C 5522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 6349697 6349697 + Silent SNP C C T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 SETBP1 26040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 42531246 42531246 + Silent SNP A A G novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86370304 86370304 + Silent SNP G G A novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 SNORD116-17 100033429 broad.mit.edu;hgsc.bcm.edu 37 15 25331751 25331751 + RNA SNP G G T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 SRGAP3 9901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9034602 9034602 + Missense_Mutation SNP C C T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 TCEB1 6921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74858967 74858967 + Nonsense_Mutation SNP G G T novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 TCEB1 6921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74858968 74858968 + Missense_Mutation SNP T T A novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T T A T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 TP53BP1 7158 hgsc.bcm.edu;ucsc.edu 37 15 43712740 43712741 + Frame_Shift_Del DEL AG AG - novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 USO1 8615 hgsc.bcm.edu;ucsc.edu 37 4 76722353 76722353 + Missense_Mutation SNP G G A rs324726 bycluster;byfrequency;by1000genomes TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6 YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75230960 75230960 + Missense_Mutation SNP T T G novel TCGA-B8-5545-01A-01D-1669-08 TCGA-B8-5545-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 514d2342-64ba-4c9f-9866-63bdbc26fda3 887f29fa-dc06-49d0-8b25-00dbdc7016a6