Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAM6 8755 broad.mit.edu 37 14 106770438 106770439 + Splice_Site INS - CT CT novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ADAM6 8755 broad.mit.edu 37 14 107183575 107183575 + RNA SNP G T T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ADAM6 8755 broad.mit.edu 37 14 107183594 107183594 + RNA SNP C T T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 AHNAK2 113146 hgsc.bcm.edu 37 14 105418155 105418155 + Silent SNP G G C rs141600524 by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ANKHD1-EIF4EBP3 404734 broad.mit.edu;ucsc.edu 37 5 139876772 139876772 + Silent SNP T C C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ANO3 63982 broad.mit.edu;hgsc.bcm.edu 37 11 26465333 26465333 + Missense_Mutation SNP A A G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ANP32E 81611 hgsc.bcm.edu 37 1 150199042 150199042 + Missense_Mutation SNP C C A rs28594165 TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ANP32E 81611 hgsc.bcm.edu 37 1 150199045 150199045 + Silent SNP T T C rs28460085 bycluster;byfrequency TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ASZ1 136991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117025841 117025841 + Missense_Mutation SNP A A G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ATCAY 85300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3905489 3905489 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ATN1 1822 hgsc.bcm.edu 37 12 7045894 7045894 + Silent SNP G G A rs139947770 byfrequency TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 C12orf60 144608 broad.mit.edu;ucsc.edu 37 12 14976216 14976216 + Missense_Mutation SNP A G G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 C7orf51 0 broad.mit.edu;hgsc.bcm.edu 37 7 100088627 100088627 + Missense_Mutation SNP G G A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 CADPS2 93664 broad.mit.edu 37 7 122303575 122303575 + Missense_Mutation SNP A C C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 CDK3 1018 broad.mit.edu;ucsc.edu 37 17 73999460 73999460 + Missense_Mutation SNP A G G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 CELSR1 9620 broad.mit.edu;ucsc.edu 37 22 46807533 46807533 + Missense_Mutation SNP A G G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 CIC 23152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42793535 42793535 + Missense_Mutation SNP A A T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 COL11A1 1301 broad.mit.edu;ucsc.edu 37 1 103444415 103444415 + Splice_Site SNP C A A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 CRIPAK 285464 hgsc.bcm.edu 37 4 1388622 1388623 + Frame_Shift_Ins INS - - CA novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 CTDP1 9150 hgsc.bcm.edu;ucsc.edu 37 18 77488985 77488985 + Silent SNP T T A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 DGKB 1607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 14378224 14378224 + Nonsense_Mutation SNP G G A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 DZIP1L 199221 broad.mit.edu;ucsc.edu 37 3 137813771 137813771 + Missense_Mutation SNP G T T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ERP27 121506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 15091412 15091412 + Missense_Mutation SNP G G T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ESR2 2100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64746834 64746834 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 FAM174B 400451 broad.mit.edu 37 15 93198679 93198684 + In_Frame_Del DEL TGGAGC - - rs68056278 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 TGGAGC TGGAGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 FILIP1 27145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 76022977 76022977 + Silent SNP A A T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 FMN2 56776 hgsc.bcm.edu;ucsc.edu 37 1 240255569 240255571 + In_Frame_Del DEL GGC GGC - rs140531536 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 GGC GGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 GPHN 10243 broad.mit.edu;hgsc.bcm.edu 37 14 67389564 67389564 + Missense_Mutation SNP A A G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 GPR101 83550 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 136112680 136112680 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 GTSE1 51512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46712158 46712158 + Silent SNP C C A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 HACL1 26061 broad.mit.edu;ucsc.edu 37 3 15609989 15609989 + Silent SNP A G G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 HIP1R 9026 broad.mit.edu 37 12 123343650 123343650 + Missense_Mutation SNP A G G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 IL9R 3581 broad.mit.edu 37 X 155239824 155239824 + Missense_Mutation SNP A G G rs3852767 TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 IL9R 3581 broad.mit.edu 37 X 155239827 155239827 + Missense_Mutation SNP A G G rs3865220 TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 INSC 387755 hgsc.bcm.edu 37 11 15243190 15243190 + Silent SNP C C T rs61742947 bycluster;byfrequency;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 INTS1 26173 broad.mit.edu 37 7 1538900 1538900 + Missense_Mutation SNP A G G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 JAG2 3714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 105617708 105617708 + Silent SNP C C T rs147768578 TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 KRTAP5-10 387273 hgsc.bcm.edu 37 11 71276888 71276888 + Silent SNP T T C rs12793134 bycluster TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 KRTAP5-4 387267 broad.mit.edu;hgsc.bcm.edu 37 11 1643255 1643255 + Silent SNP G G A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 LOC344967 344967 broad.mit.edu 37 4 40045118 40045118 + Missense_Mutation SNP C T T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MAGEC3 139081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 140953292 140953292 + Silent SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MEGF10 84466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 126778709 126778709 + Nonsense_Mutation SNP T T G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9072939 9072939 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MUC4 4585 broad.mit.edu 37 3 195511525 195511525 + Missense_Mutation SNP T C C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MUC4 4585 hgsc.bcm.edu 37 3 195508133 195508133 + Missense_Mutation SNP G G A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MUC4 4585 hgsc.bcm.edu 37 3 195509795 195509795 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MUC4 4585 hgsc.bcm.edu 37 3 195513826 195513826 + Missense_Mutation SNP G G A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MUC5B 727897 hgsc.bcm.edu 37 11 1253969 1253969 + Silent SNP A A G rs72846370 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 MYST3 0 broad.mit.edu;ucsc.edu 37 8 41791800 41791800 + Missense_Mutation SNP T C C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 NFS1 9054 broad.mit.edu;hgsc.bcm.edu 37 20 34285610 34285610 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 OR5AP2 338675 broad.mit.edu;ucsc.edu 37 11 56409234 56409234 + Missense_Mutation SNP A G G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 OSBPL11 114885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 125286405 125286405 + Nonsense_Mutation SNP A A C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 PCDHA5 56143 broad.mit.edu 37 5 140202962 140202962 + Silent SNP G A A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 PCK2 5106 broad.mit.edu;ucsc.edu 37 14 24568786 24568786 + Missense_Mutation SNP C A A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 PRB1 5542 broad.mit.edu 37 12 11506356 11506356 + Silent SNP G A A rs78796502 TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 PRRC2C 23215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171510546 171510546 + Missense_Mutation SNP G G A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 PSG5 5673 broad.mit.edu;hgsc.bcm.edu 37 19 43679580 43679580 + Missense_Mutation SNP A A G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 RAG2 5897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 36614945 36614945 + Silent SNP G G A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 RLTPR 146206 broad.mit.edu;ucsc.edu 37 16 67685104 67685104 + Missense_Mutation SNP G T T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 SCAF1 58506 broad.mit.edu 37 19 50154204 50154204 + Silent SNP A C C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 SNAPC4 6621 broad.mit.edu 37 9 139277995 139277997 + In_Frame_Del DEL GCT - - rs147271628 bycluster;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 GCT GCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158655094 158655094 + Missense_Mutation SNP T T G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 SRRM5 100170229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44116657 44116657 + Silent SNP A A C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 SRSF2 6427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74732441 74732441 + Silent SNP T T C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ST6GALNAC5 81849 broad.mit.edu 37 1 77334292 77334293 + In_Frame_Ins INS - CAGCAA CAGCAA rs113832855 alternate_allele TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152443659 152443659 + Missense_Mutation SNP T T A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 TAF7L 54457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100532702 100532702 + Nonsense_Mutation SNP C C A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 TCERG1 10915 hgsc.bcm.edu 37 5 145838653 145838653 + Silent SNP C C T rs112548582 TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 TCF19 6941 broad.mit.edu 37 6 31127384 31127384 + Silent SNP C T T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 TEKT3 64518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15207259 15207259 + Missense_Mutation SNP G G C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 TMTC3 160418 broad.mit.edu;hgsc.bcm.edu 37 12 88589406 88589406 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179604819 179604819 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 Unknown 0 broad.mit.edu 37 18 109344 109344 + RNA SNP T C C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 Unknown 0 broad.mit.edu 37 9 68413585 68413585 + RNA SNP G T T rs145928615 TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 USHBP1 83878 broad.mit.edu 37 19 17373404 17373404 + Missense_Mutation SNP G A A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 VHL 7428 hgsc.bcm.edu 37 3 10183820 10183820 + Frame_Shift_Del DEL C C - novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01W-1244-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 79b810e1-4de4-496d-9f70-ab62246e781b 06d67c16-1bb7-4454-a190-9e19549a1150 WASH3P 374666 broad.mit.edu 37 15 102516350 102516350 + Missense_Mutation SNP G A A rs62028685 TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 WDR74 54663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62606659 62606659 + Missense_Mutation SNP C C T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ZNF200 7752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3274074 3274074 + Missense_Mutation SNP A A T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ZNF423 23090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 49672052 49672052 + Silent SNP A A T novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ZNF519 162655 hgsc.bcm.edu 37 18 14105186 14105186 + Silent SNP T T C rs145376132 bycluster;byfrequency;by1000genomes TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ZNF519 162655 hgsc.bcm.edu 37 18 14105246 14105246 + Silent SNP G G A rs149803578 byfrequency TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ZNF519 162655 hgsc.bcm.edu 37 18 14105248 14105248 + Missense_Mutation SNP G G A rs148982947 byfrequency TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ZNF621 285268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 40574134 40574134 + Nonsense_Mutation SNP T T A novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 ZNF98 148198 broad.mit.edu 37 19 22574754 22574754 + Missense_Mutation SNP T G G novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090 PPIL4 85313 broad.mit.edu 37 6 149855820 149855820 + Silent SNP T C C novel TCGA-BP-4167-01A-02D-1386-10 TCGA-BP-4167-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 79b810e1-4de4-496d-9f70-ab62246e781b be250c13-93c8-4e95-b0b9-c6a4fce00090