Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMTSL3 57188 hgsc.bcm.edu;ucsc.edu 37 15 84651469 84651469 + Missense_Mutation SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 ARID4B 51742 hgsc.bcm.edu 37 1 235345429 235345429 + Nonsense_Mutation SNP C C T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 ATP11C 286410 hgsc.bcm.edu;ucsc.edu 37 X 138908947 138908947 + Silent SNP T T C novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 ATP2A2 488 hgsc.bcm.edu;ucsc.edu 37 12 110778740 110778740 + Missense_Mutation SNP C C A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 CLTC 1213 hgsc.bcm.edu;ucsc.edu 37 17 57763155 57763155 + Missense_Mutation SNP G G A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 COPB1 1315 hgsc.bcm.edu 37 11 14520433 14520433 + Silent SNP C C T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 CREBBP 1387 hgsc.bcm.edu 37 16 3807365 3807365 + Missense_Mutation SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 CYFIP2 26999 hgsc.bcm.edu;ucsc.edu 37 5 156742017 156742017 + Missense_Mutation SNP A A G novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 DBI 1622 hgsc.bcm.edu 37 2 120128350 120128350 + Silent SNP C C A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 DBX1 120237 hgsc.bcm.edu 37 11 20177783 20177783 + Nonsense_Mutation SNP G G A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 DFNB31 25861 hgsc.bcm.edu 37 9 117165103 117165103 + Silent SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 ETV3L 440695 hgsc.bcm.edu 37 1 157062696 157062696 + Silent SNP G G T rs1176537 bycluster;byfrequency;by1000genomes TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 HDLBP 3069 hgsc.bcm.edu;ucsc.edu 37 2 242203956 242203956 + Silent SNP A A C novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 HIST1H1C 3006 hgsc.bcm.edu 37 6 26056015 26056015 + Silent SNP C C T rs11540003 alternate_allele TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 HTRA4 203100 hgsc.bcm.edu;ucsc.edu 37 8 38840017 38840017 + Missense_Mutation SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 IMMT 10989 hgsc.bcm.edu;ucsc.edu 37 2 86406617 86406617 + Missense_Mutation SNP T T A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 IRAK3 11213 hgsc.bcm.edu;ucsc.edu 37 12 66597547 66597547 + Missense_Mutation SNP C C G novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 ITGAM 3684 hgsc.bcm.edu 37 16 31309271 31309271 + Missense_Mutation SNP G G A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 ITPR2 3709 hgsc.bcm.edu;ucsc.edu 37 12 26589195 26589195 + Missense_Mutation SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 KIAA1199 57214 hgsc.bcm.edu;ucsc.edu 37 15 81224218 81224218 + Silent SNP A A T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 KLK2 3817 hgsc.bcm.edu 37 19 51378101 51378101 + Silent SNP C A A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 LOX 4015 hgsc.bcm.edu;ucsc.edu 37 5 121411209 121411209 + Missense_Mutation SNP A A C novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 MDGA2 161357 hgsc.bcm.edu 37 14 47566320 47566320 + Missense_Mutation SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 MED14 9282 hgsc.bcm.edu;ucsc.edu 37 X 40570475 40570475 + Missense_Mutation SNP A A T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 MYCBP2 23077 hgsc.bcm.edu;ucsc.edu 37 13 77730192 77730192 + Splice_Site SNP C C A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 MYH15 22989 hgsc.bcm.edu 37 3 108224621 108224621 + Silent SNP T T C novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 NLRP11 204801 hgsc.bcm.edu 37 19 56321350 56321350 + Missense_Mutation SNP T T C novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 NMUR2 56923 hgsc.bcm.edu;ucsc.edu 37 5 151784054 151784054 + Missense_Mutation SNP G G C novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 NOTCH2 4853 hgsc.bcm.edu 37 1 120572547 120572547 + Missense_Mutation SNP T T C rs61788900 bycluster TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 OR9G4 283189 hgsc.bcm.edu 37 11 56510711 56510711 + Missense_Mutation SNP A A C novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 P4HA1 5033 hgsc.bcm.edu;ucsc.edu 37 10 74790028 74790028 + Splice_Site SNP C C T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 PDE1B 5153 hgsc.bcm.edu 37 12 54963142 54963142 + Silent SNP C C T rs151025806 byfrequency TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 PHTF2 57157 hgsc.bcm.edu;ucsc.edu 37 7 77552042 77552042 + Missense_Mutation SNP G G A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 POTEG 404785 hgsc.bcm.edu 37 14 19553436 19553436 + Missense_Mutation SNP C C T rs71228614 alternate_allele TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 RPL5 6125 hgsc.bcm.edu 37 1 93301855 93301857 + In_Frame_Del DEL TAT TAT - novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 TAT TAT . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 SH3D19 152503 hgsc.bcm.edu;ucsc.edu 37 4 152048840 152048840 + Missense_Mutation SNP A A T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 SIK2 23235 hgsc.bcm.edu;ucsc.edu 37 11 111558776 111558776 + Missense_Mutation SNP T T A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 SLC20A1 6574 hgsc.bcm.edu;ucsc.edu 37 2 113420443 113420443 + Silent SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 SLC8A2 6543 hgsc.bcm.edu;ucsc.edu 37 19 47940782 47940782 + Missense_Mutation SNP C C T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 SPAST 6683 hgsc.bcm.edu;ucsc.edu 37 2 32362024 32362025 + Frame_Shift_Ins INS - - C novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 SPTB 6710 hgsc.bcm.edu 37 14 65237810 65237810 + Missense_Mutation SNP G G A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 SULF2 55959 hgsc.bcm.edu 37 20 46365452 46365452 + Missense_Mutation SNP C C A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 THBS4 7060 hgsc.bcm.edu;ucsc.edu 37 5 79351852 79351852 + Silent SNP A A T rs71594659 alternate_allele TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 THNSL2 55258 hgsc.bcm.edu 37 2 88472689 88472689 + Missense_Mutation SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 TMEM49 0 hgsc.bcm.edu;ucsc.edu 37 17 57886217 57886217 + Missense_Mutation SNP G G A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 TRAF4 9618 hgsc.bcm.edu;ucsc.edu 37 17 27075315 27075315 + Nonsense_Mutation SNP C C A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 TRPV6 55503 hgsc.bcm.edu;ucsc.edu 37 7 142575416 142575416 + Missense_Mutation SNP C C G novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 TSPAN19 144448 hgsc.bcm.edu;ucsc.edu 37 12 85421765 85421765 + Missense_Mutation SNP A A T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 TUBGCP5 114791 hgsc.bcm.edu 37 15 22836163 22836163 + Missense_Mutation SNP G G A novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 UPF3A 65110 hgsc.bcm.edu 37 13 115067470 115067470 + Silent SNP A A G novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9 ZMYM4 9202 hgsc.bcm.edu;ucsc.edu 37 1 35859252 35859252 + Missense_Mutation SNP G G T novel TCGA-BP-4331-01A-01D-1366-10 TCGA-BP-4331-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 143b6360-f9b9-456a-b409-0afaac1704be 20024ca1-456b-49e1-b984-6cf81ee6e8e9