Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMTS20 80070 hgsc.bcm.edu;ucsc.edu 37 12 43896209 43896209 + Splice_Site SNP C C T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 AHNAK2 113146 hgsc.bcm.edu 37 14 105405419 105405419 + Missense_Mutation SNP C C A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 AP1G1 164 hgsc.bcm.edu;ucsc.edu 37 16 71798592 71798592 + Missense_Mutation SNP T T C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 BRD7 29117 hgsc.bcm.edu;ucsc.edu 37 16 50354652 50354652 + Missense_Mutation SNP A A G novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 C6orf146 0 hgsc.bcm.edu;ucsc.edu 37 6 4069285 4069285 + Missense_Mutation SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 CAMTA1 23261 hgsc.bcm.edu;ucsc.edu 37 1 7737703 7737703 + Missense_Mutation SNP C C A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 CDH8 1006 hgsc.bcm.edu;ucsc.edu 37 16 61761058 61761058 + Silent SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 CHD9 80205 hgsc.bcm.edu 37 16 53358033 53358033 + Silent SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 DCLK2 166614 hgsc.bcm.edu 37 4 151000431 151000431 + Silent SNP C C T rs56388384 bycluster;byfrequency;by1000genomes TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 DOCK3 1795 hgsc.bcm.edu;ucsc.edu 37 3 51284171 51284171 + Missense_Mutation SNP G G C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 DONSON 29980 hgsc.bcm.edu 37 21 34955918 34955918 + Nonsense_Mutation SNP A A C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 DONSON 29980 hgsc.bcm.edu 37 21 34955920 34955920 + Missense_Mutation SNP A A G novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 DTNB 1838 hgsc.bcm.edu;ucsc.edu 37 2 25754365 25754365 + Silent SNP T T C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 EGFR 1956 hgsc.bcm.edu 37 7 55259437 55259437 + Missense_Mutation SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 EPS15L1 58513 hgsc.bcm.edu 37 19 16547765 16547765 + Missense_Mutation SNP C C A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 FADS3 3995 hgsc.bcm.edu;ucsc.edu 37 11 61643923 61643923 + Missense_Mutation SNP G G T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 FAM22F 54754 hgsc.bcm.edu 37 9 97081994 97081994 + Silent SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 FBN3 84467 hgsc.bcm.edu 37 19 8193952 8193952 + Silent SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 FGD6 55785 hgsc.bcm.edu;ucsc.edu 37 12 95602827 95602827 + Missense_Mutation SNP C C A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 FMN1 342184 hgsc.bcm.edu;ucsc.edu 37 15 33358817 33358817 + Silent SNP C C T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 FOXP2 93986 hgsc.bcm.edu 37 7 114268729 114268729 + Missense_Mutation SNP G G T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 GON4L 54856 hgsc.bcm.edu;ucsc.edu 37 1 155774833 155774833 + Missense_Mutation SNP T T A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 GRIK2 2898 hgsc.bcm.edu;ucsc.edu 37 6 102483373 102483373 + Missense_Mutation SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 HTR6 3362 hgsc.bcm.edu 37 1 20005532 20005532 + Missense_Mutation SNP G G C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 KIAA1755 85449 hgsc.bcm.edu;ucsc.edu 37 20 36869005 36869005 + Nonsense_Mutation SNP G G A rs41282820 bycluster;byfrequency;by1000genomes TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 KLC4 89953 hgsc.bcm.edu;ucsc.edu 37 6 43042370 43042370 + Missense_Mutation SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 KRT13 3860 hgsc.bcm.edu 37 17 39658938 39658938 + Splice_Site SNP C C T rs145167376 TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 MAP3K5 4217 hgsc.bcm.edu 37 6 137112970 137112970 + Missense_Mutation SNP T T A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 MED17 9440 hgsc.bcm.edu;ucsc.edu 37 11 93535101 93535101 + Missense_Mutation SNP G G T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 MPPED2 744 hgsc.bcm.edu;ucsc.edu 37 11 30435856 30435856 + Missense_Mutation SNP T T C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 MTMR4 9110 hgsc.bcm.edu 37 17 56584197 56584197 + Missense_Mutation SNP T T A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 OBSL1 23363 hgsc.bcm.edu 37 2 220421377 220421377 + Missense_Mutation SNP A A G novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 PALLD 23022 hgsc.bcm.edu 37 4 169842820 169842820 + Missense_Mutation SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52621464 52621464 + Nonsense_Mutation SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 PCK1 5105 hgsc.bcm.edu 37 20 56136506 56136506 + Silent SNP C C T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 PDGFRB 5159 hgsc.bcm.edu 37 5 149506122 149506122 + Silent SNP G G C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 PHLPP2 23035 hgsc.bcm.edu;ucsc.edu 37 16 71689235 71689235 + Silent SNP C C T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 POLR2B 5431 hgsc.bcm.edu;ucsc.edu 37 4 57873145 57873145 + Nonsense_Mutation SNP C C T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 POLR3A 11128 hgsc.bcm.edu;ucsc.edu 37 10 79744977 79744977 + Missense_Mutation SNP G G C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 POMT1 10585 hgsc.bcm.edu 37 9 134397604 134397604 + Missense_Mutation SNP C C G novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 PRC1 9055 hgsc.bcm.edu;ucsc.edu 37 15 91523521 91523521 + Silent SNP C C T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 RBM15 64783 hgsc.bcm.edu 37 1 110883715 110883715 + Missense_Mutation SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 RPS6KB2 6199 hgsc.bcm.edu 37 11 67197002 67197002 + Missense_Mutation SNP T T G novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 RTN4IP1 84816 hgsc.bcm.edu;ucsc.edu 37 6 107069326 107069326 + Nonsense_Mutation SNP C C A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 SLCO1B1 10599 hgsc.bcm.edu 37 12 21355424 21355424 + Splice_Site SNP G G T rs143895524 alternate_allele TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 SMCHD1 23347 hgsc.bcm.edu;ucsc.edu 37 18 2796405 2796405 + Missense_Mutation SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 SYNE1 23345 hgsc.bcm.edu 37 6 152461141 152461141 + Missense_Mutation SNP G G T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 TCHHL1 126637 hgsc.bcm.edu;ucsc.edu 37 1 152058664 152058664 + Missense_Mutation SNP T T G novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 TNFSF10 8743 hgsc.bcm.edu;ucsc.edu 37 3 172232773 172232773 + Missense_Mutation SNP A A T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 TRPM7 54822 hgsc.bcm.edu;ucsc.edu 37 15 50899483 50899483 + Missense_Mutation SNP G G C novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 UTP14A 10813 hgsc.bcm.edu;ucsc.edu 37 X 129054543 129054543 + Missense_Mutation SNP A A T novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188289 10188289 + Frame_Shift_Del DEL A A - novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 ZBTB48 3104 hgsc.bcm.edu 37 1 6640756 6640756 + Silent SNP T T A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195 ZNF385B 151126 hgsc.bcm.edu;ucsc.edu 37 2 180383279 180383279 + Silent SNP G G A novel TCGA-BP-4341-01A-01D-1366-10 TCGA-BP-4341-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID d641189e-e44b-45e1-b753-73414d7ad31a 70039797-32c1-4349-bb4d-10f6ed415195