Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCD3 5825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94953300 94953300 + Silent SNP T T C novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b ADAM9 8754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38899622 38899622 + Missense_Mutation SNP T T A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b ADAMTS19 171019 hgsc.bcm.edu 37 5 128797315 128797316 + In_Frame_Ins INS - - CCCGGC novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b APOB 338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 21225774 21225774 + Missense_Mutation SNP C C T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b BRP44 0 broad.mit.edu;hgsc.bcm.edu 37 1 167887490 167887490 + RNA SNP A A T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b C10orf2 56652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102749574 102749574 + Missense_Mutation SNP C C T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b C17orf71 0 hgsc.bcm.edu;ucsc.edu 37 17 57292221 57292225 + Frame_Shift_Del DEL CCCTT CCCTT - novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 CCCTT CCCTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CACNA1D 776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53844188 53844188 + Missense_Mutation SNP C C A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CATSPERG 57828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38853135 38853135 + Missense_Mutation SNP C C A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CD300LG 146894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41931245 41931245 + Missense_Mutation SNP G G T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CD300LG 146894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41931246 41931246 + Missense_Mutation SNP C C A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CD74 972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149792311 149792311 + Missense_Mutation SNP A A T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CDK6 1021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92252376 92252376 + Silent SNP A A G novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CEP164 22897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117265695 117265695 + Silent SNP C C T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CLSPN 63967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36230187 36230187 + Missense_Mutation SNP T T A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b CXorf21 80231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 30578381 30578381 + Missense_Mutation SNP T T C novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b DCAF13 25879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 104438314 104438314 + Missense_Mutation SNP A A G novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b DCTD 1635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 183836682 183836682 + Missense_Mutation SNP C C T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b ERP44 23071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 102822388 102822388 + Frame_Shift_Del DEL T T - novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b FOXP2 93986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 114282567 114282567 + Missense_Mutation SNP C C T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b IL12RB2 3595 hgsc.bcm.edu;ucsc.edu 37 1 67845752 67845761 + Frame_Shift_Del DEL CTGACAGCTG CTGACAGCTG - novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 CTGACAGCTG CTGACAGCTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b ISG20L2 81875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156697247 156697247 + Silent SNP C C T rs61742814 TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 6983136 6983136 + Missense_Mutation SNP C C A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b MLL 4297 hgsc.bcm.edu;ucsc.edu 37 11 118372561 118372561 + Nonsense_Mutation SNP T T A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b MOXD1 26002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132643865 132643865 + Missense_Mutation SNP T T C novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b PARP4 143 broad.mit.edu;hgsc.bcm.edu 37 13 25008976 25008976 + Missense_Mutation SNP G G T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b PAX1 5075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21689243 21689243 + Missense_Mutation SNP G G A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52668655 52668655 + Nonsense_Mutation SNP G G A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b PIK3R4 30849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130454821 130454821 + Silent SNP T T C novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b PLA2G16 11145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63357820 63357820 + Missense_Mutation SNP C C T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b PRR16 51334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 120021872 120021872 + Missense_Mutation SNP G G T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b RANBP2 5903 broad.mit.edu;hgsc.bcm.edu 37 2 109384150 109384150 + Silent SNP A A G novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b RNF145 153830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158603687 158603687 + Silent SNP A A G novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b RPS2 6187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2012906 2012906 + Missense_Mutation SNP A A T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b RREB1 6239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7231393 7231393 + Missense_Mutation SNP T T A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b S100A5 6276 hgsc.bcm.edu;ucsc.edu 37 1 153509895 153509895 + Silent SNP G G A rs3795395 bycluster;byfrequency;by1000genomes TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b SCG2 7857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 224463043 224463043 + Missense_Mutation SNP C C A novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b SLC6A12 6539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 318976 318976 + Silent SNP G G C novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b SNW1 22938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78217740 78217740 + Silent SNP A A G novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b TBC1D19 55296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 26741524 26741524 + Silent SNP T T C novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b TSPAN1 10103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46646810 46646810 + Missense_Mutation SNP A A G rs184135661 by1000genomes TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b UIMC1 51720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176332369 176332369 + Silent SNP A A G novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b Unknown 0 broad.mit.edu 37 16 74411881 74411881 + Missense_Mutation SNP C T T novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b ZFP3 124961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4995604 4995604 + Missense_Mutation SNP A A C novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b ZNF611 81856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53209367 53209367 + Missense_Mutation SNP C C A rs144132013 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b ZNF622 90441 hgsc.bcm.edu;ucsc.edu 37 5 16465400 16465400 + Missense_Mutation SNP C C G rs113566156 bycluster;byfrequency;by1000genomes TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b VHL 7428 ucsc.edu 37 3 10188190 10188196 + Splice_Site DEL CCCGATA CCCGATA - novel TCGA-BP-5170-01A-01D-1429-08 TCGA-BP-5170-11A-01D-1429-08 CCCGATA CCCGATA CCCGATA - CCCGATA CCCGATA Unknown Valid Somatic . WXS PGM . . Illumina HiSeq 68761b2c-66b9-4adf-9b60-955f79ed0f11 bd5e01bf-68f5-4812-be2b-ccf301ca6b1b