Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID APPL1 26060 hgsc.bcm.edu 37 3 57280133 57280133 + Nonsense_Mutation SNP C C A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 ARHGAP31 57514 hgsc.bcm.edu 37 3 119133103 119133103 + Missense_Mutation SNP A A C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 ASL 435 hgsc.bcm.edu 37 7 65554635 65554635 + Missense_Mutation SNP A A G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 ATXN7L1 222255 hgsc.bcm.edu 37 7 105254438 105254438 + Silent SNP C C T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 C13orf18 0 hgsc.bcm.edu;ucsc.edu 37 13 46918949 46918949 + Silent SNP G G A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 C3 718 hgsc.bcm.edu;ucsc.edu 37 19 6702221 6702221 + Missense_Mutation SNP A A T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 C8orf86 389649 hgsc.bcm.edu 37 8 38386152 38386152 + Missense_Mutation SNP T T C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 C9orf57 138240 hgsc.bcm.edu;ucsc.edu 37 9 74667326 74667326 + Missense_Mutation SNP T T G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 CACNA1E 777 hgsc.bcm.edu 37 1 181453105 181453105 + Silent SNP T T C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 CC2D2A 57545 hgsc.bcm.edu;ucsc.edu 37 4 15538634 15538634 + Missense_Mutation SNP T T C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 CCR5 1234 hgsc.bcm.edu 37 3 46414947 46414947 + Missense_Mutation SNP G G T rs112590754 TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 CDH18 1016 hgsc.bcm.edu 37 5 19544098 19544098 + Missense_Mutation SNP T T G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64172226 64172226 + Silent SNP A A G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 CHSY3 337876 hgsc.bcm.edu 37 5 129520699 129520699 + Missense_Mutation SNP C C A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 CLRN2 645104 hgsc.bcm.edu;ucsc.edu 37 4 17524535 17524535 + Missense_Mutation SNP T T C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 COMMD7 149951 hgsc.bcm.edu;ucsc.edu 37 20 31291229 31291229 + Silent SNP C C A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 CXorf48 54967 hgsc.bcm.edu 37 X 134292203 134292203 + Missense_Mutation SNP A A G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 DIAPH1 1729 hgsc.bcm.edu;ucsc.edu 37 5 140905613 140905613 + Missense_Mutation SNP A A G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 DNAH12 201625 hgsc.bcm.edu;ucsc.edu 37 3 57405106 57405106 + Missense_Mutation SNP A A G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56495059 56495059 + Missense_Mutation SNP A A T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 ETFB 2109 hgsc.bcm.edu 37 19 51850290 51850290 + Missense_Mutation SNP G G A rs1130426 bycluster;byfrequency;by1000genomes TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 HK3 3101 hgsc.bcm.edu 37 5 176308431 176308431 + Silent SNP G G T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 HLA-DQB1 3119 hgsc.bcm.edu 37 6 32629146 32629146 + Silent SNP G G A rs112517017 bycluster;byfrequency TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 ITPKC 80271 hgsc.bcm.edu 37 19 41223765 41223765 + Missense_Mutation SNP C C A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 KCNJ12 3768 hgsc.bcm.edu 37 17 21319786 21319786 + Missense_Mutation SNP G G A rs78547883 bycluster;byfrequency TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 KIAA2022 340533 hgsc.bcm.edu;ucsc.edu 37 X 73962408 73962408 + Missense_Mutation SNP C C T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 LIMCH1 22998 hgsc.bcm.edu 37 4 41664844 41664844 + Missense_Mutation SNP A A C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 MRPL18 29074 hgsc.bcm.edu;ucsc.edu 37 6 160218373 160218373 + Silent SNP T T C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 MTOR 2475 hgsc.bcm.edu;ucsc.edu 37 1 11182158 11182158 + Missense_Mutation SNP A A C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A A C A A Unknown Valid Somatic Phase_I WXS 454 SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 NPR1 4881 hgsc.bcm.edu;ucsc.edu 37 1 153658648 153658648 + Missense_Mutation SNP C C A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 PARP8 79668 hgsc.bcm.edu;ucsc.edu 37 5 50093052 50093052 + Missense_Mutation SNP T T G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52620674 52620674 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 PLAG1 5324 hgsc.bcm.edu 37 8 57079842 57079842 + Missense_Mutation SNP A A T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 PLOD2 5352 hgsc.bcm.edu;ucsc.edu 37 3 145804638 145804638 + Missense_Mutation SNP T T C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 POLR3B 55703 hgsc.bcm.edu 37 12 106895189 106895189 + Missense_Mutation SNP C C G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 PPFIA1 8500 hgsc.bcm.edu;ucsc.edu 37 11 70200406 70200406 + Splice_Site SNP G G T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 PRKCZ 5590 hgsc.bcm.edu;ucsc.edu 37 1 2077494 2077494 + Missense_Mutation SNP C C T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 PRODH2 58510 hgsc.bcm.edu 37 19 36303154 36303154 + Missense_Mutation SNP T T C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 PTGFRN 5738 hgsc.bcm.edu 37 1 117484595 117484595 + Missense_Mutation SNP A A G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 RPAP1 26015 hgsc.bcm.edu;ucsc.edu 37 15 41810335 41810335 + Missense_Mutation SNP G G C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 TAF15 8148 hgsc.bcm.edu 37 17 34171885 34171885 + Silent SNP C C A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 THAP9 79725 hgsc.bcm.edu 37 4 83838547 83838547 + Missense_Mutation SNP C C G novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 TNR 7143 hgsc.bcm.edu;ucsc.edu 37 1 175293500 175293500 + Missense_Mutation SNP G G T novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 TULP3 7289 hgsc.bcm.edu 37 12 3029963 3029963 + Missense_Mutation SNP G G C novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26 ZNF804A 91752 hgsc.bcm.edu 37 2 185802211 185802211 + Missense_Mutation SNP C C A novel TCGA-CJ-4887-01A-01D-1373-10 TCGA-CJ-4887-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 612c63e4-c8ab-41a5-ba46-d35277407b12 0a088b77-d040-40f2-8471-74d732939d26