Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AGK 55750 hgsc.bcm.edu 37 7 141341644 141341644 + Missense_Mutation SNP A A G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 ALPL 249 hgsc.bcm.edu 37 1 21887655 21887655 + Missense_Mutation SNP G G A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 ARHGEF17 9828 hgsc.bcm.edu 37 11 73021006 73021007 + Frame_Shift_Del DEL CA CA - novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 ATR 545 hgsc.bcm.edu;ucsc.edu 37 3 142241591 142241591 + Missense_Mutation SNP A A T novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 BAI2 576 hgsc.bcm.edu 37 1 32193184 32193184 + Missense_Mutation SNP C C G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 BIRC6 57448 hgsc.bcm.edu 37 2 32692693 32692693 + Missense_Mutation SNP T T G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 C13orf27 0 hgsc.bcm.edu 37 13 103418816 103418816 + Nonsense_Mutation SNP C C A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 CACNA1I 8911 hgsc.bcm.edu;ucsc.edu 37 22 40078528 40078528 + Missense_Mutation SNP C C T rs185177048 by1000genomes TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 DCHS2 54798 hgsc.bcm.edu 37 4 155156936 155156936 + Missense_Mutation SNP C C A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 DCT 1638 hgsc.bcm.edu 37 13 95121259 95121259 + Silent SNP G G A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 DEPDC1B 55789 hgsc.bcm.edu 37 5 59895075 59895075 + Nonsense_Mutation SNP C C A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 EIF4E1B 253314 hgsc.bcm.edu;ucsc.edu 37 5 176070710 176070710 + Missense_Mutation SNP G G A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 FZD4 8322 hgsc.bcm.edu 37 11 86662332 86662332 + Missense_Mutation SNP A A G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 GGA3 23163 hgsc.bcm.edu 37 17 73235514 73235514 + Silent SNP C C G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 GRIN2B 2904 hgsc.bcm.edu 37 12 13716545 13716545 + Silent SNP C C G rs149089581 alternate_allele TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 HOXB1 3211 hgsc.bcm.edu 37 17 46608181 46608181 + Missense_Mutation SNP G G C novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 ITGAM 3684 hgsc.bcm.edu;ucsc.edu 37 16 31336054 31336054 + Missense_Mutation SNP A A G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 JAKMIP1 152789 hgsc.bcm.edu 37 4 6086641 6086641 + Missense_Mutation SNP C C T novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 LIN54 132660 hgsc.bcm.edu;ucsc.edu 37 4 83849392 83849392 + Missense_Mutation SNP C C G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 LRRC27 80313 hgsc.bcm.edu 37 10 134161545 134161545 + Missense_Mutation SNP T T G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 MME 4311 hgsc.bcm.edu 37 3 154898167 154898167 + Silent SNP G G A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 MSH3 4437 hgsc.bcm.edu;ucsc.edu 37 5 80074600 80074600 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 NBPF14 25832 hgsc.bcm.edu 37 1 148021592 148021592 + Missense_Mutation SNP C C T novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 NRG1 3084 hgsc.bcm.edu;ucsc.edu 37 8 32505779 32505779 + Missense_Mutation SNP T T A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 OR13A1 79290 hgsc.bcm.edu 37 10 45799761 45799761 + Missense_Mutation SNP T T C novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 PAPOLB 56903 hgsc.bcm.edu 37 7 4901302 4901302 + Missense_Mutation SNP A A G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 PLEKHA7 144100 hgsc.bcm.edu;ucsc.edu 37 11 16816509 16816509 + Silent SNP C C T novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 RAB10 10890 hgsc.bcm.edu;ucsc.edu 37 2 26332677 26332677 + Missense_Mutation SNP T T A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 RALGAPB 57148 hgsc.bcm.edu;ucsc.edu 37 20 37150282 37150282 + Silent SNP G G A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 RARB 5915 hgsc.bcm.edu;ucsc.edu 37 3 25470335 25470335 + Missense_Mutation SNP G G A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 RUNX1 861 hgsc.bcm.edu 37 21 36259170 36259170 + Silent SNP G G T novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 SEH1L 81929 hgsc.bcm.edu 37 18 12963339 12963339 + Missense_Mutation SNP A A C novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 SLC26A11 284129 hgsc.bcm.edu 37 17 78221983 78221983 + Missense_Mutation SNP A A G novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 SLC9A3 6550 hgsc.bcm.edu;ucsc.edu 37 5 485324 485324 + Missense_Mutation SNP G G C novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 UIMC1 51720 hgsc.bcm.edu 37 5 176382976 176382976 + Silent SNP T T C novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 VPS13A 23230 hgsc.bcm.edu;ucsc.edu 37 9 79910543 79910543 + Missense_Mutation SNP A A C novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3 ZCWPW1 55063 hgsc.bcm.edu 37 7 100004924 100004924 + Missense_Mutation SNP C C A novel TCGA-CJ-4893-01A-01D-1373-10 TCGA-CJ-4893-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9403d19b-9af5-478e-8ff2-1b2a9008fd13 41bb10ac-c625-417e-b123-16925beb07b3