Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID A2M 2 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9230391 9230391 + Missense_Mutation SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 A2M 2 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9230405 9230405 + Silent SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ABCC11 85320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 48244895 48244895 + Silent SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 AGRN 375790 hgsc.bcm.edu;ucsc.edu 37 1 979247 979251 + Frame_Shift_Del DEL GCAGG GCAGG - novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 GCAGG GCAGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 AHNAK 79026 broad.mit.edu;hgsc.bcm.edu 37 11 62295513 62295513 + Missense_Mutation SNP A A T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 AKAP13 11214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86123644 86123644 + Missense_Mutation SNP A A G novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56205106 56205106 + Silent SNP A A T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 AMICA1 120425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118074350 118074350 + Missense_Mutation SNP G G T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ANPEP 290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90349608 90349608 + Silent SNP T T C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 AP4E1 23431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51293254 51293254 + Missense_Mutation SNP A A G novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 APOB 338 hgsc.bcm.edu;ucsc.edu 37 2 21229016 21229016 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ARHGAP31 57514 broad.mit.edu;ucsc.edu 37 3 119132967 119132967 + Missense_Mutation SNP T A A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ARSD 414 hgsc.bcm.edu 37 X 2835999 2836007 + In_Frame_Del DEL CCACGCCGG CCACGCCGG - rs113556864 TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 CCACGCCGG CCACGCCGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ATP1A4 480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160144415 160144415 + Missense_Mutation SNP C C T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 CAPN12 147968 hgsc.bcm.edu;ucsc.edu 37 19 39229287 39229288 + Frame_Shift_Del DEL CT CT - novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 CCDC48 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128758645 128758645 + Missense_Mutation SNP C C T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 DHX9 1660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182841497 182841497 + Missense_Mutation SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 FADS6 283985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72888762 72888762 + Missense_Mutation SNP A A T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 FAM113A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2819279 2819279 + Missense_Mutation SNP A A G novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 FAM190B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 86130886 86130886 + Silent SNP A A T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 FAM5C 339479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 190068181 190068181 + Missense_Mutation SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127685089 127685089 + Missense_Mutation SNP C C T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 FOXD4L1 200350 broad.mit.edu 37 2 114257620 114257620 + Missense_Mutation SNP C T T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 FRAS1 80144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79458343 79458343 + Missense_Mutation SNP T T G novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 GCM1 8521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52993017 52993017 + Missense_Mutation SNP C C T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 GJA8 2703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 147380712 147380712 + Missense_Mutation SNP G G T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 GRID1 2894 broad.mit.edu;hgsc.bcm.edu 37 10 87407096 87407096 + Missense_Mutation SNP C C T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 GRM1 2911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 146720058 146720058 + Missense_Mutation SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 GUSB 2990 broad.mit.edu;ucsc.edu 37 7 65439618 65439618 + Missense_Mutation SNP G A A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 HGSNAT 138050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 43002122 43002122 + Missense_Mutation SNP G G T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 HMBS 3145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118963206 118963206 + Silent SNP C C A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 KCNJ3 3760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 155555522 155555522 + Missense_Mutation SNP A A C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 KCNK18 338567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118957020 118957020 + Silent SNP C C T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 KDELR3 11015 hgsc.bcm.edu;ucsc.edu 37 22 38877232 38877235 + Frame_Shift_Del DEL TCTA TCTA - novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 TCTA TCTA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 KHK 3795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27322321 27322321 + Silent SNP C C T rs142428157 byfrequency TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 KIAA0182 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 85696693 85696693 + Silent SNP C C T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 KIF20A 10112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137522869 137522869 + Missense_Mutation SNP T T C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 KRT19 3880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39680198 39680198 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 LOC284232 0 broad.mit.edu 37 13 19415641 19415641 + RNA SNP A T T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 LOC642846 642846 broad.mit.edu 37 12 9458891 9458891 + RNA SNP A G G rs2911828 bycluster TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 LRRC7 57554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70504369 70504369 + Silent SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 MEIS1 4211 broad.mit.edu 37 2 66667009 66667009 + Nonsense_Mutation SNP G T T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 MTMR10 54893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 31266655 31266655 + Missense_Mutation SNP G G T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 MUC5B 727897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1264193 1264193 + Missense_Mutation SNP C C G novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 MYH11 4629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15841458 15841458 + Missense_Mutation SNP G G C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 NUP88 4927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5322725 5322725 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 P2RX2 22953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133196058 133196058 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 PCK1 5105 broad.mit.edu;ucsc.edu 37 20 56138156 56138156 + Missense_Mutation SNP T G G novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 PKN3 29941 broad.mit.edu 37 9 131469089 131469089 + Missense_Mutation SNP G A A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 POLR3A 11128 hgsc.bcm.edu;ucsc.edu 37 10 79764626 79764626 + Missense_Mutation SNP C C A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 POM121L9P 29774 broad.mit.edu 37 22 24659691 24659691 + RNA SNP G A A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 PRSS21 10942 broad.mit.edu 37 16 2867459 2867459 + Splice_Site SNP T G G novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 RPS6KA1 6195 broad.mit.edu;hgsc.bcm.edu 37 1 26887302 26887302 + Missense_Mutation SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 RTL1 388015 broad.mit.edu;ucsc.edu 37 14 101347402 101347402 + Missense_Mutation SNP G A A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 RYR3 6263 broad.mit.edu;ucsc.edu 37 15 34118467 34118467 + Missense_Mutation SNP C T T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 SLC38A10 124565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79257257 79257257 + Silent SNP C C A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 STYX 6815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 53213187 53213187 + Missense_Mutation SNP T T A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 THSD1P1 374500 broad.mit.edu 37 13 52803480 52803480 + RNA SNP G T T rs2768223 bycluster TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 TP53I3 9540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24307098 24307098 + Missense_Mutation SNP C C A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 TP53I3 9540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24307099 24307099 + Missense_Mutation SNP T T C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 TP53I3 9540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24307100 24307100 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 TRPM6 140803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 77416960 77416960 + Missense_Mutation SNP C C A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 TTC30B 150737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178415573 178415573 + Missense_Mutation SNP T T C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 TUBGCP5 114791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 22846911 22846911 + Missense_Mutation SNP G G C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 TXNDC5 81567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7904955 7904955 + Missense_Mutation SNP A A G novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 Unknown 0 broad.mit.edu 37 15 102292820 102292820 + Silent SNP G C C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 Unknown 0 broad.mit.edu 37 15 85787980 85787980 + Missense_Mutation SNP T G G rs446487 TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 Unknown 0 broad.mit.edu 37 9 68413570 68413570 + RNA SNP G A A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 Unknown 0 broad.mit.edu 37 9 70182344 70182346 + RNA DEL TTG - - novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 TTG TTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 USP35 57558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77919916 77919916 + Missense_Mutation SNP C C A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 VPS54 51542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 64161068 64161068 + Missense_Mutation SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 VWF 7450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6204730 6204730 + Missense_Mutation SNP A A T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ZBTB38 253461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141161785 141161785 + Missense_Mutation SNP G G T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ZDHHC9 51114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 128975882 128975882 + Missense_Mutation SNP A A T novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ZNF646 9726 broad.mit.edu;hgsc.bcm.edu 37 16 31089296 31089296 + Missense_Mutation SNP G G A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47887117 47887117 + Missense_Mutation SNP T T A novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144 MACROD2 140733 ucsc.edu 37 20 15948281 15948281 + Intron SNP T T C novel TCGA-CJ-4902-01A-01D-1429-08 TCGA-CJ-4902-11A-01D-1429-08 T T T C T T Unknown Valid Somatic . WXS PGM . . Illumina HiSeq 3ef9ea62-85c4-4261-af23-ecb86f192cdf fc22c32f-f803-4803-b98d-bc1a2e693144