Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACOT1 641371 hgsc.bcm.edu 37 14 74009978 74009978 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ACOT2 10965 hgsc.bcm.edu 37 14 74041836 74041836 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ACTG1 71 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79478982 79478982 + Silent SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ADRB2 154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 148207220 148207220 + Missense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 AKAP7 9465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131540937 131540937 + Missense_Mutation SNP C C A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ARFGEF1 10565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68111271 68111271 + Silent SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ARID1A 8289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27107213 27107213 + Missense_Mutation SNP T T C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 BANK1 55024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 102751087 102751087 + Missense_Mutation SNP T T A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 BCAR3 8412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94048304 94048304 + Missense_Mutation SNP T T C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 BCAR3 8412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94048425 94048425 + Silent SNP G G T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 BDH2 56898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 104000886 104000886 + Silent SNP G G T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 C13orf1 0 broad.mit.edu;hgsc.bcm.edu 37 13 50489191 50489191 + RNA SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 C17orf91 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1617206 1617206 + RNA SNP C C A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 C9orf163 158055 broad.mit.edu 37 9 139379131 139379131 + Silent SNP G A A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 CAMK1 8536 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9809372 9809383 + In_Frame_Del DEL TCGTAGATGTCT TCGTAGATGTCT - novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 TCGTAGATGTCT TCGTAGATGTCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 CCDC157 550631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30766638 30766638 + Silent SNP C C G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 CLSTN1 22883 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9809930 9809930 + Missense_Mutation SNP G G T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 CNTNAP4 85445 broad.mit.edu;hgsc.bcm.edu 37 16 76495979 76495979 + Missense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94050324 94050324 + Missense_Mutation SNP C C A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 CSMD2 114784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 34052715 34052715 + Missense_Mutation SNP C C T rs143826784 TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 CUL1 8454 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148454216 148454216 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 DSG4 147409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28972163 28972163 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 DUSP16 80824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 12629998 12629998 + Silent SNP A A T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 EMILIN1 11117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27307380 27307380 + Missense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14755050 14755050 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 FAM19A4 151647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 68802104 68802104 + Missense_Mutation SNP G G A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 FAM54A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 136562720 136562720 + Missense_Mutation SNP C C G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 FAM83B 222584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54805594 54805594 + Missense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 FOXM1 2305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2983386 2983386 + Missense_Mutation SNP T T A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 FYB 2533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 39202090 39202090 + Missense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 GBF1 8729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104126846 104126846 + Missense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 GGN 199720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38876071 38876071 + Missense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 GPBAR1 151306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219127645 219127645 + Silent SNP G G T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 GPR123 84435 broad.mit.edu;hgsc.bcm.edu 37 10 134942620 134942620 + Missense_Mutation SNP C C G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 GTF2I 2969 hgsc.bcm.edu 37 7 74149837 74149840 + Frame_Shift_Del DEL AAGA AAGA - novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 AAGA AAGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 HEATR7B2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41065513 41065513 + Missense_Mutation SNP T T G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160471666 160471666 + Silent SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 IPO11 51194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 61779118 61779118 + Missense_Mutation SNP A A C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 KANK1 23189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 732501 732501 + Silent SNP T T C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 KCNH7 90134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 163236424 163236424 + Missense_Mutation SNP T T G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 KLHL21 9903 broad.mit.edu;hgsc.bcm.edu 37 1 6655551 6655551 + Missense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 LMTK2 22853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 97766647 97766647 + Missense_Mutation SNP G G A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 LRRC33 375387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196387275 196387275 + Missense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 MAOA 4128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 43571993 43571993 + Silent SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 MCCC2 64087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70945080 70945080 + Missense_Mutation SNP G G A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 MLL 4297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118370617 118370617 + Silent SNP T T A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 MPZL2 10205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118133279 118133279 + Missense_Mutation SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 MST1P2 11209 broad.mit.edu 37 1 16974745 16974745 + RNA SNP G A A rs78283833 byfrequency TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 MST1P2 11209 broad.mit.edu 37 1 16974758 16974758 + RNA SNP G A A rs78488193 byfrequency TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 MYBL1 4603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67484765 67484765 + Missense_Mutation SNP C C A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 MYO10 4651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16711272 16711272 + Missense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120468210 120468210 + Silent SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176562309 176562309 + Missense_Mutation SNP T T C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 NUP160 23279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47827752 47827752 + Missense_Mutation SNP A A C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52621512 52621515 + Frame_Shift_Del DEL ACAA ACAA - novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 ACAA ACAA ACAA - ACAA ACAA Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 PLAGL2 5326 broad.mit.edu;hgsc.bcm.edu 37 20 30784502 30784502 + Missense_Mutation SNP G G A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 PRTFDC1 56952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 25145923 25145923 + Missense_Mutation SNP T T G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 RABGAP1 23637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125782628 125782628 + Silent SNP T T C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 RAD50 10111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131930637 131930637 + Missense_Mutation SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 RBM26 64062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 79940847 79940847 + Missense_Mutation SNP A A C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 RBM28 55131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127961369 127961369 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 RC3H1 149041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 173934019 173934019 + Missense_Mutation SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 RMND5B 64777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 177574549 177574549 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 RNASEL 6041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182544563 182544563 + Silent SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 RNPEPL1 57140 broad.mit.edu 37 2 241514017 241514017 + Silent SNP C T T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 SEC23IP 11196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 121657969 121657969 + Missense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 SHANK2 22941 broad.mit.edu;hgsc.bcm.edu 37 11 70338536 70338536 + Missense_Mutation SNP G G T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 SLC14A2 8170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 43212331 43212331 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 SLC5A12 159963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26718743 26718743 + Silent SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 SLC9A1 6548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27440753 27440753 + Nonsense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 SVOPL 136306 broad.mit.edu;hgsc.bcm.edu 37 7 138333763 138333763 + Silent SNP G G T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 SYCP2L 221711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10907856 10907856 + Missense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 TBC1D24 57465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2549923 2549923 + Missense_Mutation SNP G G A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 TMEM149 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36230813 36230813 + Silent SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 TMEM208 29100 broad.mit.edu 37 16 67261756 67261756 + Silent SNP C T T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 TNIK 23043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170893117 170893117 + Missense_Mutation SNP G G A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 TNRC6B 23112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40662303 40662303 + Missense_Mutation SNP A A C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 TRPC4 7223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 38266299 38266299 + Silent SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 TSHZ3 57616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 31767620 31767620 + Missense_Mutation SNP T T C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179427281 179427281 + Missense_Mutation SNP C C G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 UBN2 254048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138944050 138944050 + Missense_Mutation SNP A A G novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 Unknown 0 broad.mit.edu 37 3 159706882 159706882 + Splice_Site SNP A C C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 VAC14 55697 broad.mit.edu 37 16 70834811 70834811 + Translation_Start_Site SNP G T T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188204 10188204 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85664902 85664902 + Silent SNP G G A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 WDR93 56964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90276288 90276288 + Missense_Mutation SNP T T A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 WHAMML1 0 broad.mit.edu 37 15 23205094 23205094 + RNA SNP G A A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 WNK1 65125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 936351 936351 + Missense_Mutation SNP G G C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 YLPM1 56252 broad.mit.edu;ucsc.edu 37 14 75230625 75230626 + Frame_Shift_Ins INS - CC CC novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ZDHHC5 25921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57457522 57457522 + Missense_Mutation SNP C C T novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35580008 35580008 + Silent SNP C C A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ZNF215 7762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6953811 6953811 + Missense_Mutation SNP A A C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ZNF292 23036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 87969169 87969169 + Missense_Mutation SNP A A C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ZNF429 353088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 21719682 21719682 + Missense_Mutation SNP A A C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ZNF560 147741 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9578075 9578075 + Missense_Mutation SNP A A C novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0 ZNF713 349075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 56007482 56007482 + Missense_Mutation SNP G G A novel TCGA-CJ-4912-01A-01D-1429-08 TCGA-CJ-4912-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 894ade93-8feb-4f93-a31a-d9e16eb81743 fa597cce-bae4-49b7-8d02-d00582f821f0