Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACSM2A 123876 broad.mit.edu;hgsc.bcm.edu 37 16 20489924 20489925 + Frame_Shift_Ins INS - - C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 AQR 9716 broad.mit.edu;ucsc.edu 37 15 35236588 35236588 + Missense_Mutation SNP T G G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 ARMCX5 64860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101857839 101857841 + In_Frame_Del DEL CTC CTC - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 ASCC3 10973 hgsc.bcm.edu;ucsc.edu 37 6 101049749 101049749 + Frame_Shift_Del DEL T T - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 ATP6V1A 523 hgsc.bcm.edu;ucsc.edu 37 3 113528254 113528254 + Frame_Shift_Del DEL T T - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 BTNL8 79908 hgsc.bcm.edu 37 5 180375376 180375379 + Frame_Shift_Del DEL GTAA GTAA - rs10541574 TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 GTAA GTAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 C17orf47 284083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56620394 56620394 + Missense_Mutation SNP A A T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 C21orf56 0 broad.mit.edu;hgsc.bcm.edu 37 21 47588274 47588274 + Silent SNP C C T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CAPN3 825 hgsc.bcm.edu;ucsc.edu 37 15 42701963 42701963 + RNA SNP C C G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CAPN6 827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 110494226 110494226 + Nonsense_Mutation SNP G G T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CBLB 868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 105400639 105400639 + Frame_Shift_Del DEL A A - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CCDC127 133957 hgsc.bcm.edu;ucsc.edu 37 5 205842 205847 + In_Frame_Del DEL TTCTTT TTCTTT - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 TTCTTT TTCTTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CD82 3732 broad.mit.edu 37 11 44639740 44639740 + Missense_Mutation SNP A G G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CDH2 1000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 25532271 25532271 + Nonsense_Mutation SNP A A T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CEP152 22995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49089548 49089548 + Missense_Mutation SNP G G T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CSMD2 114784 broad.mit.edu;ucsc.edu 37 1 34189862 34189862 + Missense_Mutation SNP C A A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 CYP17A1 1586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104596868 104596868 + Missense_Mutation SNP T T A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 DENR 8562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123238330 123238330 + Missense_Mutation SNP C C G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 DHRS4 10901 broad.mit.edu 37 14 24424420 24424420 + Missense_Mutation SNP C T T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 EPHA6 285220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 97198177 97198177 + Missense_Mutation SNP G G C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 ERVFRDE1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 11105212 11105212 + Missense_Mutation SNP C C A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 FAS 355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90762874 90762874 + Missense_Mutation SNP C C T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86089421 86089421 + Silent SNP C C T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 HIVEP2 3097 broad.mit.edu;ucsc.edu 37 6 143081503 143081503 + Silent SNP A G G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 IGFBP4 3487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38610249 38610249 + Missense_Mutation SNP C C T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 JMJD1C 221037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 64968907 64968907 + Missense_Mutation SNP G G C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 JMJD4 65094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227921679 227921679 + Nonsense_Mutation SNP C C T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 KCNH3 23416 hgsc.bcm.edu;ucsc.edu 37 12 49935453 49935453 + Frame_Shift_Del DEL G G - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 KIAA0319 9856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24596226 24596226 + Missense_Mutation SNP C C T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 KIAA1731 85459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93436013 93436013 + Missense_Mutation SNP G G A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 LPIN1 23175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11919652 11919652 + Missense_Mutation SNP G G A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 LRFN5 145581 broad.mit.edu 37 14 42356893 42356893 + Missense_Mutation SNP T A A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 LTBP1 4052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 33622348 33622348 + Silent SNP C C G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 LYG1 129530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99901199 99901199 + Nonsense_Mutation SNP C C A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MAP3K15 389840 broad.mit.edu;hgsc.bcm.edu 37 X 19398325 19398325 + Missense_Mutation SNP G G C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MGAM 8972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 141752123 141752123 + Silent SNP C C A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MPP2 4355 broad.mit.edu 37 17 41960604 41960604 + Missense_Mutation SNP C G G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MUC21 394263 hgsc.bcm.edu 37 6 30954438 30954438 + Silent SNP C C T rs41288646 TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MUC4 4585 broad.mit.edu;hgsc.bcm.edu 37 3 195512921 195512921 + Missense_Mutation SNP T T C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MUC4 4585 hgsc.bcm.edu 37 3 195506102 195506102 + Missense_Mutation SNP C C T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MUC4 4585 hgsc.bcm.edu 37 3 195510060 195510107 + In_Frame_Del DEL GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MUC5B 727897 hgsc.bcm.edu 37 11 1272671 1272671 + Missense_Mutation SNP T T C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 MYLIP 29116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 16146960 16146960 + Missense_Mutation SNP T T C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 NBPF9 400818 broad.mit.edu 37 1 144220807 144220807 + Missense_Mutation SNP A C C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 NEFH 4744 hgsc.bcm.edu 37 22 29885593 29885594 + In_Frame_Ins INS - - TGAGAAGGCCAAGTCCCC rs59279731 bycluster TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 NHP2 55651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 177576774 177576774 + Missense_Mutation SNP C C G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 OR5AR1 219493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56432011 56432011 + Missense_Mutation SNP A A T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 OR5L1 219437 broad.mit.edu;hgsc.bcm.edu 37 11 55579578 55579578 + Missense_Mutation SNP G G T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 PCDH1 5097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141242928 141242928 + Nonsense_Mutation SNP T T A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 PLCG2 5336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 81954855 81954855 + Missense_Mutation SNP G G A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 PPP6R3 55291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68315579 68315579 + Silent SNP T T A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 PPRC1 23082 broad.mit.edu 37 10 103907139 103907139 + Silent SNP A C C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 PRIM2 5558 broad.mit.edu 37 6 57512916 57512917 + Splice_Site INS - T T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 PRIM2 5558 broad.mit.edu 37 6 57512930 57512931 + Splice_Site INS - GT GT novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 RAPGEF6 51735 broad.mit.edu;ucsc.edu 37 5 130825242 130825242 + Missense_Mutation SNP A C C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 RGPD1 400966 broad.mit.edu 37 2 88125182 88125182 + Missense_Mutation SNP C G G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 RTKN2 219790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63958010 63958010 + Missense_Mutation SNP T T G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 SLC5A11 115584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24920266 24920266 + Missense_Mutation SNP T T A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 SLC5A11 115584 broad.mit.edu;ucsc.edu 37 16 24920271 24920271 + Missense_Mutation SNP G C C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86369560 86369560 + Missense_Mutation SNP G G T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 SOCS7 30837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36523827 36523827 + Silent SNP A A G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 SSPO 23145 hgsc.bcm.edu 37 7 149516839 149516839 + Frame_Shift_Del DEL C C - rs145311298 by1000genomes TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 STH 246744 broad.mit.edu 37 17 44076968 44076968 + Missense_Mutation SNP A C C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 TAS2R13 50838 hgsc.bcm.edu;ucsc.edu 37 12 11061401 11061401 + Frame_Shift_Del DEL T T - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 THBS3 7059 broad.mit.edu;hgsc.bcm.edu 37 1 155172612 155172612 + Missense_Mutation SNP G G T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 THBS3 7059 broad.mit.edu;hgsc.bcm.edu 37 1 155172613 155172613 + Missense_Mutation SNP T T A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 TNNI1 7135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201384351 201384351 + Missense_Mutation SNP A A G novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 TRMT61B 55006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29073074 29073074 + Silent SNP T T C novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 UNC5B 219699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73050863 73050863 + Missense_Mutation SNP C C T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 Unknown 0 broad.mit.edu 37 15 20193216 20193216 + RNA SNP G T T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 Unknown 0 broad.mit.edu 37 9 68414523 68414523 + RNA SNP A G G rs4352957 TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61450407 61450407 + Missense_Mutation SNP G G T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 VHL 7428 hgsc.bcm.edu 37 3 10183734 10183734 + Nonsense_Mutation SNP C C A novel TCGA-CW-5581-01A-02W-1584-10 TCGA-CW-5581-11A-01W-1585-10 C C C A C C Unknown Valid Somatic Phase_I WXS Illumina Miseq . . PacBio RS f75c2b3b-b7d6-4364-9abc-65a050b69668 adde7384-5684-4442-b53e-77b0aa93be0d YTHDC2 64848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112902905 112902905 + Missense_Mutation SNP G G T novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 ZBTB41 360023 hgsc.bcm.edu;ucsc.edu 37 1 197159958 197159959 + Frame_Shift_Del DEL AA AA - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 ZNF555 148254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2853267 2853267 + Missense_Mutation SNP G G A novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 ZNF709 163051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12574850 12574850 + Missense_Mutation SNP C C T rs183982301 by1000genomes;alternate_allele TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198 KDM5C 8242 ucsc.edu 37 X 53222684 53222694 + Frame_Shift_Del DEL TGTGGTTCTCA TGTGGTTCTCA - novel TCGA-CW-5581-01A-02D-1534-10 TCGA-CW-5581-11A-01D-1535-10 TGTGGTTCTCA TGTGGTTCTCA TGTGGTTCTCA - TGTGGTTCTCA TGTGGTTCTCA Unknown Valid Somatic . WXS PGM . . Illumina HiSeq 9dd4c01f-e870-4108-95d7-dc7cc03999ef 9e10c397-7f80-4c05-a536-1bb1fce0a198