Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID 1SEPT4 0 broad.mit.edu;hgsc.bcm.edu 37 7 55886846 55886846 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ABLIM3 22885 broad.mit.edu;hgsc.bcm.edu 37 5 148590289 148590289 + Missense_Mutation SNP G G T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ACVR1 90 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158595006 158595006 + Silent SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 AKR1B1 231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134134487 134134487 + Frame_Shift_Del DEL A A - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 AMZ2P1 201283 broad.mit.edu 37 17 62964436 62964436 + RNA SNP G T T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ANXA10 11199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 169100409 169100409 + Missense_Mutation SNP G G T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ARHGDIB 397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 15103538 15103538 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 BBS9 27241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 33376135 33376135 + Missense_Mutation SNP C C G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 BTNL3 10917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180424374 180424374 + Missense_Mutation SNP A A C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A A C A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 C10orf137 26098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 127442319 127442319 + Missense_Mutation SNP A A C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 C11orf17 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 8940960 8940960 + Nonsense_Mutation SNP T T G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 C11orf9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61539075 61539075 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 C20orf11 0 hgsc.bcm.edu;ucsc.edu 37 20 61576211 61576214 + Frame_Shift_Del DEL AAAT AAAT - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 AAAT AAAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 C2orf29 55571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 101883240 101883240 + Missense_Mutation SNP A A G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CELSR1 9620 broad.mit.edu;hgsc.bcm.edu 37 22 46792566 46792566 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CIITA 4261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 10997656 10997656 + Missense_Mutation SNP C C G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CILP 8483 broad.mit.edu;hgsc.bcm.edu 37 15 65499201 65499201 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CIRH1A 84916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69199288 69199288 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CLCA4 22802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87031612 87031612 + Missense_Mutation SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CLPB 81570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 72005414 72005414 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CNGB3 54714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 87591035 87591035 + Missense_Mutation SNP A A T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 COLEC12 81035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 346953 346953 + Silent SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 COPS2 9318 broad.mit.edu 37 15 49423011 49423011 + Missense_Mutation SNP G T T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CP 1356 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 148928072 148928072 + Silent SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 CYP4A11 1579 broad.mit.edu 37 1 47401310 47401310 + Missense_Mutation SNP C T T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 DET1 55070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89056233 89056233 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 DNAJC25-GNG10 552891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114429212 114429212 + Silent SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 DOT1L 84444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2211150 2211150 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 EID3 493861 hgsc.bcm.edu;ucsc.edu 37 12 104698324 104698325 + Frame_Shift_Ins INS - - T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 EIF2C4 192670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36319144 36319144 + Nonsense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 EML2 24139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46119737 46119737 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 F13B 2165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197024881 197024881 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 FAM108C1 58489 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81046666 81046666 + Silent SNP A A G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 FAM59A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29867421 29867421 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 FGFR1 2260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38272389 38272389 + Missense_Mutation SNP C C G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 FMN2 56776 broad.mit.edu 37 1 240255569 240255571 + In_Frame_Del DEL GGC - - rs140531536 bycluster;by1000genomes TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 GGC GGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 GCNT2 2651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10586869 10586869 + Frame_Shift_Del DEL C C - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 GCSH 2653 broad.mit.edu;hgsc.bcm.edu 37 16 81118200 81118200 + Splice_Site SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 GJB3 2707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35250435 35250435 + Nonsense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 GPHN 10243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 67147886 67147886 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 GPR116 221395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46830726 46830726 + Missense_Mutation SNP T T G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 GPT 2875 hgsc.bcm.edu 37 8 145732305 145732306 + Frame_Shift_Ins INS - - C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 HRH4 59340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 22056745 22056745 + Missense_Mutation SNP A A G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 HSP90B3P 343477 broad.mit.edu 37 1 92108377 92108377 + Missense_Mutation SNP A C C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ITGAE 3682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3657179 3657179 + Silent SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 KIAA0100 9703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26965110 26965110 + Silent SNP A A G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 KIAA0922 23240 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 154504367 154504367 + Missense_Mutation SNP A A G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 KIAA1462 57608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 30316647 30316647 + Missense_Mutation SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 L1CAM 3897 hgsc.bcm.edu 37 X 153130543 153130543 + Silent SNP G G A rs35902890 bycluster;byfrequency;alternate_allele TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 LARP1B 55132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 129012653 129012653 + Silent SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 LCE1B 353132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152785104 152785104 + Missense_Mutation SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 LMO4 8543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87805280 87805280 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 M6PR 4074 hgsc.bcm.edu 37 12 9098995 9098996 + In_Frame_Ins INS - - AAC novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MAGED2 10916 broad.mit.edu;hgsc.bcm.edu 37 X 54841822 54841822 + Missense_Mutation SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MAGEE1 57692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 75648791 75648791 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MAP1B 4131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 71494891 71494891 + Silent SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MAPK8IP1 9479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 45925699 45925699 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MCC 4163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 112437520 112437520 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MS4A14 84689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60183976 60183976 + Missense_Mutation SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MTNR1B 4544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92702959 92702959 + Nonsense_Mutation SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8976796 8976796 + Silent SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MYO16 23026 broad.mit.edu;ucsc.edu 37 13 109779862 109779862 + Missense_Mutation SNP G A A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 MYO5C 55930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52571772 52571772 + Nonsense_Mutation SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 NAGK 55577 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71299849 71299849 + Missense_Mutation SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 NCOR2 9612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124839984 124839984 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 NPHP1 4867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 110922222 110922222 + Missense_Mutation SNP G G T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 NTNG2 84628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135102354 135102354 + Silent SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 OAZ3 51686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151740639 151740639 + Missense_Mutation SNP G G T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 OR10T2 128360 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158368416 158368416 + Missense_Mutation SNP C C G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PAFAH1B1 5048 hgsc.bcm.edu 37 17 2577360 2577360 + Silent SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PDE4A 5141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10574570 10574570 + Missense_Mutation SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PHB2 11331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7079388 7079388 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PIP4K2C 79837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57995122 57995122 + Silent SNP C C G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PITPNM2 57605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123497230 123497232 + In_Frame_Del DEL ATA ATA - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 ATA ATA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PLB1 151056 hgsc.bcm.edu;ucsc.edu 37 2 28752187 28752187 + Frame_Shift_Del DEL T T - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 POPDC2 64091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119367299 119367299 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PPP2R2B 5521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145969638 145969638 + Missense_Mutation SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PRDM1 639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 106553602 106553602 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PRPF8 10594 hgsc.bcm.edu;ucsc.edu 37 17 1559850 1559855 + In_Frame_Del DEL GTAAGT GTAAGT - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 GTAAGT GTAAGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PTGR2 145482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74327307 74327307 + Frame_Shift_Del DEL A A - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 PTPRU 10076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29585159 29585159 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 QDPR 5860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 17506031 17506031 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RASGEF1B 153020 hgsc.bcm.edu 37 4 82366985 82366985 + Missense_Mutation SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RCC2 55920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 17748729 17748729 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RHCG 51458 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90022631 90022631 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RP1 6101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55542521 55542521 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RPL23AP53 644128 broad.mit.edu 37 8 163325 163325 + RNA SNP C T T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RREB1 6239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7229380 7229380 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RSAD2 91543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 7023569 7023569 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RUVBL2 10856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49510383 49510383 + Missense_Mutation SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39038896 39038896 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SCAI 286205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 127733961 127733961 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SEL1L3 23231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 25834685 25834685 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SETD5 55209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9495474 9495474 + Missense_Mutation SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SHANK1 50944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51215207 51215207 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SHC2 25759 broad.mit.edu;hgsc.bcm.edu 37 19 422337 422337 + Missense_Mutation SNP G G T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SLC17A6 57084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22397594 22397594 + Nonsense_Mutation SNP C C A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SLC26A11 284129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78215586 78215586 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SLC38A2 54407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46760917 46760917 + Silent SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SLC6A3 6531 hgsc.bcm.edu;ucsc.edu 37 5 1443043 1443044 + Frame_Shift_Ins INS - - CACA novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SLITRK5 26050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 88329649 88329649 + Missense_Mutation SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SNRPN 6638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 25220568 25220568 + Missense_Mutation SNP G G T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SOX4 6659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 21594792 21594792 + Missense_Mutation SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SP8 221833 broad.mit.edu 37 7 20824858 20824858 + Frame_Shift_Del DEL A - - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SPSB3 90864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1827748 1827748 + Missense_Mutation SNP C C G rs147512809 alternate_allele TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SPTAN1 6709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131331096 131331096 + Missense_Mutation SNP A A T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SRCIN1 80725 broad.mit.edu 37 17 36717995 36717996 + Frame_Shift_Ins INS - A A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ST6GALNAC1 55808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74625522 74625522 + Missense_Mutation SNP T T C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SYNGR1 9145 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 39777742 39777742 + Silent SNP C C G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 SYNJ1 8867 broad.mit.edu;hgsc.bcm.edu 37 21 34053921 34053921 + Missense_Mutation SNP T T G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 TDRD6 221400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46660119 46660119 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 THAP2 83591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 72068028 72068028 + Silent SNP T T G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 TMTC3 160418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 88588684 88588684 + Missense_Mutation SNP C C G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 TMX2 51075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57505890 57505890 + Frame_Shift_Del DEL T T - novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 TNRC18 84629 broad.mit.edu;ucsc.edu 37 7 5391571 5391571 + Silent SNP C T T rs186010377 by1000genomes TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 215990344 215990344 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191540 10191541 + Frame_Shift_Ins INS - - G novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 VLDLR 7436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2652826 2652826 + Missense_Mutation SNP T T A rs140801553 by1000genomes;alternate_allele TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ZC3H18 124245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 88694152 88694152 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ZMYND10 51364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50380356 50380356 + Silent SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ZNF276 92822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89804478 89804478 + Missense_Mutation SNP G G C novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ZNF397 84307 hgsc.bcm.edu 37 18 32822821 32822821 + Silent SNP G G A novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88 ZNF546 339327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40520538 40520538 + Missense_Mutation SNP C C T novel TCGA-CW-6090-01A-11D-1669-08 TCGA-CW-6090-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3b2e654a-4c13-4dab-9e18-1445a43af3e6 fffaa9d0-d063-4b59-9328-323215bf3e88