Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ALDH1A1 216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 75555088 75555088 + Silent SNP G G A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 ATP10D 57205 hgsc.bcm.edu 37 4 47560001 47560001 + Silent SNP G G A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 BTBD9 114781 broad.mit.edu;ucsc.edu 37 6 38160335 38160335 + Missense_Mutation SNP G T T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 C2orf57 165100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232458055 232458055 + Missense_Mutation SNP A A C novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6712358 6712358 + Silent SNP G G A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 C3orf63 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 56667432 56667432 + Missense_Mutation SNP G G T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 CEP170 9859 broad.mit.edu 37 1 243362432 243362432 + Missense_Mutation SNP C A A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 DRD5 1816 broad.mit.edu 37 4 9783962 9783962 + Silent SNP G T T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 FAM71B 153745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156592758 156592758 + Missense_Mutation SNP C C T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 FAM71B 153745 broad.mit.edu;ucsc.edu 37 5 156592756 156592756 + Silent SNP G A A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 GPATCH8 23131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42476146 42476146 + Missense_Mutation SNP C C A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 HEPHL1 341208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93836116 93836116 + Missense_Mutation SNP G G T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 IQGAP1 8826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91020913 91020913 + Missense_Mutation SNP A A C novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 IVL 3713 hgsc.bcm.edu 37 1 152882772 152882801 + In_Frame_Del DEL GAGCAGCAGGAGGGACAGCTGAAGCACCCG GAGCAGCAGGAGGGACAGCTGAAGCACCCG - novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 GAGCAGCAGGAGGGACAGCTGAAGCACCCG GAGCAGCAGGAGGGACAGCTGAAGCACCCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 KIAA0415 0 broad.mit.edu;ucsc.edu 37 7 4830337 4830337 + Missense_Mutation SNP T C C novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 KITLG 4254 hgsc.bcm.edu;ucsc.edu 37 12 88939566 88939566 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 LAMA2 3908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 129371227 129371227 + Missense_Mutation SNP C C A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 LIPE 3991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42912472 42912472 + Missense_Mutation SNP G G C novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 LOC388692 388692 broad.mit.edu 37 1 149280301 149280302 + RNA INS - A A rs11386501 bycluster;byfrequency TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235971939 235971939 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 MOCS2 4338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 52404436 52404436 + Missense_Mutation SNP G G A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 NLRP8 126205 broad.mit.edu;ucsc.edu 37 19 56467043 56467043 + Missense_Mutation SNP G T T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 NT5C1B 93034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 18765441 18765441 + Silent SNP C C T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 OTC 5009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 38262963 38262963 + Silent SNP C C T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 PCDHGA5 56110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140745027 140745027 + Missense_Mutation SNP G G A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 PI15 51050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 75756222 75756222 + Missense_Mutation SNP G G T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 PRKCI 5584 broad.mit.edu 37 3 169940502 169940503 + Frame_Shift_Del DEL AG - - novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 PSG3 5671 broad.mit.edu 37 19 43234081 43234081 + Missense_Mutation SNP G C C novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 PTOV1 53635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50358311 50358311 + Missense_Mutation SNP T T A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36143766 36143766 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 RASGRP3 25780 hgsc.bcm.edu;ucsc.edu 37 2 33747059 33747059 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 RBM19 9904 hgsc.bcm.edu;ucsc.edu 37 12 114364876 114364877 + Frame_Shift_Ins INS - - T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 RRBP1 6238 broad.mit.edu;ucsc.edu 37 20 17641024 17641024 + Silent SNP G T T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 TRIM45 80263 broad.mit.edu 37 1 117661045 117661045 + Missense_Mutation SNP C T T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 Unknown 0 broad.mit.edu 37 X 155254706 155254706 + Missense_Mutation SNP C T T rs4612551 TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 WDFY4 57705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 49988080 49988080 + Silent SNP C C T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 ZNF160 90338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53577475 53577475 + Silent SNP C C T novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 ZNF543 125919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57838032 57838032 + Nonsense_Mutation SNP C C G novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20 BAP1 8314 ucsc.edu 37 3 52438499 52438499 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5452-01A-01D-1501-10 TCGA-CZ-5452-11A-01D-1501-10 T T T - T T Unknown Valid Somatic . WXS PGM . . Illumina HiSeq 96bd68cb-5d8e-4de1-88ca-5f30fbdde036 fdf88258-9b8a-434a-b396-df5242420b20