Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ARPP19 10776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52844224 52844224 + Silent SNP C C T novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 C14orf145 0 broad.mit.edu;ucsc.edu 37 14 81259370 81259370 + Missense_Mutation SNP T C C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 C16orf55 124045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89724745 89724745 + Missense_Mutation SNP G G C rs149646248 alternate_allele TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 CAP1 10487 hgsc.bcm.edu 37 1 40535489 40535490 + Frame_Shift_Ins INS - - G novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 CFL1 1072 hgsc.bcm.edu 37 11 65622863 65622863 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58564211 58564211 + Missense_Mutation SNP T T C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 CRB1 23418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197411309 197411309 + Missense_Mutation SNP A A C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 CTSL3 0 broad.mit.edu;hgsc.bcm.edu 37 9 90387883 90387883 + RNA SNP C C A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 ETF1 2107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137848455 137848455 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 EYS 346007 hgsc.bcm.edu;ucsc.edu 37 6 64436568 64436568 + Missense_Mutation SNP A A G novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 GALR1 2587 broad.mit.edu;ucsc.edu 37 18 74962847 74962847 + Missense_Mutation SNP T C C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 GOLGA6L5 374650 broad.mit.edu 37 15 85053188 85053188 + RNA SNP C G G rs76166627 TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 HGC6.3 100128124 hgsc.bcm.edu 37 6 168376930 168376971 + In_Frame_Del DEL AGGAGGAGGCAGTGGGGGTCATTACCCCTGCAGTGTGTTGGG AGGAGGAGGCAGTGGGGGTCATTACCCCTGCAGTGTGTTGGG - rs72123553 alternate_allele TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 AGGAGGAGGCAGTGGGGGTCATTACCCCTGCAGTGTGTTGGG AGGAGGAGGCAGTGGGGGTCATTACCCCTGCAGTGTGTTGGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 KAT5 10524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65480531 65480531 + Splice_Site SNP T T G novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 LEPROTL1 23484 broad.mit.edu 37 8 29994916 29994916 + Silent SNP T G G novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 LILRB1 10859 broad.mit.edu;hgsc.bcm.edu 37 19 55142960 55142960 + Missense_Mutation SNP C C T novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 MAGT1 84061 broad.mit.edu;hgsc.bcm.edu 37 X 77150869 77150869 + Silent SNP G G T novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 MARCH10 162333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60813347 60813347 + Nonsense_Mutation SNP T T A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 MST1P2 11209 broad.mit.edu 37 1 16973855 16973855 + RNA SNP G A A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 MTUS2 23281 broad.mit.edu;ucsc.edu 37 13 30071435 30071435 + Missense_Mutation SNP G C C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 MUC4 4585 broad.mit.edu 37 3 195505836 195505836 + Missense_Mutation SNP G C C rs78985720 alternate_allele TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 NBEAL2 23218 broad.mit.edu;ucsc.edu 37 3 47037324 47037324 + Silent SNP C G G novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 NKAIN3 286183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 63831061 63831061 + Missense_Mutation SNP A A T novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 NT5C3 51251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 33055308 33055308 + Silent SNP G G A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 NUAK2 81788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205275383 205275383 + Missense_Mutation SNP G G T novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110471954 110471954 + Missense_Mutation SNP T T C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 RAB11FIP3 9727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 532561 532561 + Missense_Mutation SNP G G A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 RDH16 8608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57345981 57345981 + Silent SNP C C T novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 RNF25 64320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219532832 219532832 + Missense_Mutation SNP G G A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 RYR3 6263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 33873834 33873834 + Silent SNP C C T novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 SLC1A4 6509 broad.mit.edu 37 2 65217245 65217245 + Missense_Mutation SNP G C C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 SLC35A5 55032 broad.mit.edu;ucsc.edu 37 3 112300127 112300127 + Missense_Mutation SNP A G G novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158644146 158644146 + Missense_Mutation SNP A A T novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 STAT2 6773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56748290 56748290 + Missense_Mutation SNP T T C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 TBC1D3 729873 hgsc.bcm.edu 37 17 36294433 36294434 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 TRA2B 6434 broad.mit.edu;ucsc.edu 37 3 185643314 185643314 + Missense_Mutation SNP G C C novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 UBE3C 9690 broad.mit.edu;ucsc.edu 37 7 157018150 157018150 + Missense_Mutation SNP G A A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 UNC50 25972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99232913 99232913 + Missense_Mutation SNP C C G novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 Unknown 0 broad.mit.edu 37 X 155252987 155252988 + In_Frame_Ins INS - CAGCACCAC CAGCACCAC novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188240 10188240 + Missense_Mutation SNP T T A novel TCGA-CZ-5458-01A-01D-1501-10 TCGA-CZ-5458-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1737382a-a1c9-45e1-b009-a29be1d93749 3accf146-13ec-4425-8326-31363f8c1234