Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
WDR64	128025	hgsc.bcm.edu	37	1	241875146	241875146	+	Silent	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	WDR64-91	NM_144625	exon8	c.T987C	p.F329F	CACTTTTTGCTAC	.	40	2	95	0	.	0	0	0	0	0
PCDH15	65217	broad.mit.edu;bcgsc.ca	37	10	55617003	55617003	+	Silent	SNP	C	C	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PCDH15-193	NM_001142763	exon29	c.G3753T	p.L1251L	CATATCCAGCTGA	.	128	6	89	0	.	0	0	0	0	0
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129245700	129245700	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	DOCK1-698	NM_001380	exon51	c.T5393A	p.V1798D	CCGATGTCCCACC	.	20	4	40	0	.	9	6	3	0	0
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6281226	6281226	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CCKBR-574	NM_176875	exon1	c.G68C	p.R23P	TGTGCCGCCCGGG	.	26	7	23	0	.	0	0	0	0	0
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46920187	46920187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	LRP4-94	NM_002334	exon7	c.A718T	p.S240C	GGCCACTGTCACA	.	294	67	325	1	.	0	0	0	0	0
DCP1B	196513	hgsc.bcm.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	DCP1B-91	NM_152640	exon7	c.G756C	p.Q252H	CTGCTGCTGGTGG	.	97	5	73	1	.	8	8	0	0	0
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	15784493	15784493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	EPS8-94	NM_004447	exon18	c.G1927T	p.A643S	CAGGTGCTGGAGT	.	173	28	150	0	.	28	21	7	0	0
SCAF11	9169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46320210	46320210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SCAF11-93	NM_004719	exon11	c.C3274A	p.Q1092K	CATTCTGATCTTT	.	145	23	133	0	.	2	2	0	0	0
INHBC	3626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57828750	57828750	+	Silent	SNP	A	A	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	INHBC-514	NM_005538	exon1	c.A81C	p.P27P	GTGTCCAGCATGT	.	97	15	67	0	.	1	1	0	0	0
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105428135	105428135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALDH1L2-91	NM_001034173	exon19	c.T2187G	p.I729M	AGCAGCAATACAG	.	91	18	95	0	.	0	0	0	0	0
RNF6	6049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	26788332	26788332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RNF6-228	NM_183043	exon5	c.A1687T	p.S563C	TGTCACTGTTTCG	.	185	50	198	0	.	7	5	2	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20857434	20857434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	TEP1-95	NM_007110	exon17	c.G2488A	p.D830N	TCACATCATTGGG	.	77	17	141	0	.	0	0	0	0	0
SYNE2	23224	hgsc.bcm.edu	37	14	64520135	64520135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SYNE2-164	NM_182914	exon48	c.A9504G	p.I3168M	TCAGATAAAATCT	.	30	2	72	0	.	1	1	0	0	0
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	25959389	25959389	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ATP10A-139	NM_024490	exon11	c.1777-1G>C	.	CCTCACCTGCAAG	.	43	5	79	0	.	0	0	0	0	0
ALDH3A2	224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19575183	19575183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALDH3A2-228	NM_001031806	exon9	c.T1357A	p.F453I	GGAAAATTTTTTC	.	298	65	236	0	.	14	9	5	0	0
PROCA1	147011	hgsc.bcm.edu;bcgsc.ca	37	17	27038593	27038593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PROCA1-91	NM_152465	exon1	c.G86A	p.C29Y	CCGCGGCATCTGC	.	86	13	87	0	.	0	0	0	0	0
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77079593	77079593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ENGASE-91	NM_001042573	exon9	c.C1172G	p.P391R	ATCTGCCCACACA	.	78	11	52	0	.	5	4	1	0	0
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79094952	79094952	+	Silent	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	AATK-933	NM_001080395	exon11	c.T2784A	p.S928S	CCCTCCAGAGGGG	.	27	7	29	0	.	0	0	0	0	0
ZNF208	7757	hgsc.bcm.edu	37	19	22154841	22154841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ZNF208-7	NM_007153	exon4	c.A2995G	p.K999E	AGGGTTTCTCTCC	.	50	3	54	0	.	54	52	0	0	2
FCGRT	2217	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	50017180	50017180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	FCGRT-91	NM_001136019	exon3	c.T115C	p.S39P	GTGTCCTCGCCTG	.	231	64	286	2	.	58	37	21	0	0
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24991159	24991159	+	Silent	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	NCOA1-228	NM_003743	exon21	c.C4225T	p.L1409L	CCTTACCTGAACC	.	141	27	159	0	.	2	2	0	0	0
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74657398	74657398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RTKN-91	NM_001015055	exon5	c.T526C	p.F176L	TCTGAAAGGAGAT	.	44	8	49	0	.	20	14	6	0	0
SPOPL	339745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	139308572	139308572	+	Silent	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SPOPL-92	NM_001001664	exon4	c.A300G	p.A100A	TCGAGCAAAATTC	.	119	32	103	0	.	1	1	0	0	0
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	143718222	143718222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	KYNU-92	NM_001199241	exon9	c.C612G	p.I204M	GGATATCCTTGAA	.	93	15	87	0	.	3	3	0	0	0
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160665004	160665004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	LY75-90	NM_002349	exon33	c.A4778G	p.N1593S	GTAATGTTATTAT	.	82	21	80	0	.	4	2	2	0	0
ABCA12	26154	broad.mit.edu;bcgsc.ca	37	2	215821466	215821466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ABCA12-99	NM_173076	exon42	c.A6154G	p.I2052V	CAATGATACCAAT	.	125	5	116	1	.	3	3	0	0	0
PCSK2	5126	hgsc.bcm.edu	37	20	17462695	17462695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PCSK2-157	NM_002594	exon12	c.A1897G	p.S633G	CTGAAAAGCATCC	.	47	3	38	0	.	0	0	0	0	0
CSRP2BP	57325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18142850	18142850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CSRP2BP-525	NM_020536	exon5	c.C1069G	p.P357A	CTGATTCCAGATG	.	629	129	596	0	.	0	0	0	0	0
HM13	81502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30137040	30137040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	HM13-153	NM_178581	exon6	c.G571A	p.A191T	GGCCTGGCCTTCT	.	349	63	326	0	.	90	68	22	0	0
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	NCOA6-292	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	82	6	56	1	.	7	7	0	0	0
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40080522	40080522	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CHD6-238	NM_032221	exon22	c.G3467C	p.W1156S	AGTTCCCAAATGA	.	279	45	213	0	.	3	2	1	0	0
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49367023	49367023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PARD6B-91	NM_032521	exon3	c.T1117C	p.X373R	ACATTATGAAACC	.	62	11	59	0	.	3	2	1	0	0
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62648174	62648174	+	Silent	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PRPF6-70	NM_012469	exon12	c.T1623C	p.H541H	GAAGCATACCTGG	.	77	13	80	2	.	30	21	9	0	0
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	38159473	38159473	+	Silent	SNP	A	A	G	rs201702862		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	DLEC1-161	NM_007337	exon33	c.A4662G	p.S1554S	AGCCTCAGCGGAC	.	23	5	32	0	A|0.999;G|0.000	0	0	0	0	0
RGS12	6002	hgsc.bcm.edu;broad.mit.edu	37	4	3441324	3441324	+	Silent	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RGS12-226	NM_198229	exon18	c.T4257C	p.P1419P	TGGGCCTCCTACA	.	39	8	35	0	.	3	3	0	0	0
CCNG2	901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	78082688	78082688	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CCNG2-416	NM_004354	exon5	c.C583T	p.R195X	AACTGCCGACTCA	.	57	9	64	0	.	10	10	0	0	0
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119952706	119952706	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SYNPO2-92	NM_001128934	exon4	c.A2776T	p.N926Y	GCCTATAATCCTA	.	108	30	128	0	.	0	0	0	0	0
MAML3	55534	hgsc.bcm.edu	37	4	140811126	140811126	+	Silent	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MAML3-455	NM_018717	exon2	c.G1464A	p.Q488Q	CTGTTGCTGTTGC	.	28	2	34	1	.	0	0	0	0	0
ANKRD32	84250	broad.mit.edu	37	5	94030836	94030836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ANKRD32-92	NM_032290	exon21	c.C2996A	p.T999N	AAGAAACCACCAG	.	59	14	49	4	.	0	0	0	0	0
FTMT	94033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121188229	121188229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	FTMT-91	NM_177478	exon1	c.G571A	p.D191N	TTGTGCGATTTCC	.	217	55	237	0	.	0	0	0	0	0
TRIM52	84851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180687083	180687083	+	Silent	SNP	G	G	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	TRIM52-90	NM_032765	exon1	c.C732A	p.A244A	ACAGATGGCCTCT	.	155	39	257	0	.	2	1	1	0	0
MEOX2	4223	hgsc.bcm.edu	37	7	15725794	15725794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MEOX2-515	NM_005924	exon1	c.C234G	p.H78Q	ATGGTGGTGATGG	.	13	3	16	2	.	0	0	0	0	0
MEOX2	4223	hgsc.bcm.edu	37	7	15725809	15725809	+	Silent	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MEOX2-515	NM_005924	exon1	c.C219T	p.H73H	GTGGTGGTGGTGG	.	17	8	16	2	.	0	0	0	0	0
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44607797	44607797	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	DDX56-227	NM_019082	exon12	c.A1409C	p.D470A	TGGAGGTCCCTAG	.	53	9	57	0	.	32	19	13	0	0
RELN	5649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	103234873	103234873	+	Silent	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RELN-574	NM_173054	exon26	c.C3606G	p.P1202P	GAACACGGGCTGC	.	341	22	334	0	.	1	1	0	0	0
CFTR	1080	hgsc.bcm.edu	37	7	117174330	117174330	+	Missense_Mutation	SNP	A	A	G	rs200885306		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CFTR-518	NM_000492	exon5	c.A490G	p.T164A	TTTTAGACTTTAA	.	40	2	35	0	.	0	0	0	0	0
CPED1	79974	hgsc.bcm.edu	37	7	120655879	120655879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	.	NM_001105533	exon2	c.T410C	p.L137P	CTGGCCTAGGGCC	.	36	2	40	0	.	0	0	0	0	0
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10388999	10388999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PRSS55-91	NM_001197020	exon3	c.C542G	p.P181R	CGCAGCCCGGCCC	.	102	11	110	0	.	0	0	0	0	0
TRHR	7201	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	110131438	110131438	+	Silent	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	TRHR-620	NM_003301	exon2	c.G951A	p.P317P	CAACCCGGTGATT	.	333	67	250	2	.	0	0	0	0	0
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139790649	139790649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	COL22A1-103	NM_152888	exon15	c.G1705A	p.G569R	GGGGCCCCTGCAG	.	59	21	55	0	.	0	0	0	0	0
UHRF2	115426	hgsc.bcm.edu	37	9	6493920	6493920	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	UHRF2-721	NM_152896	exon10	c.C1592G	p.T531R	CATTAACAAACAT	.	37	2	54	0	.	0	0	0	0	0
ANKS6	203286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101533259	101533259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ANKS6-92	NM_173551	exon10	c.T1891A	p.F631I	GGTTGAAGTTTCC	.	56	13	56	0	.	1	0	1	0	0
ALG2	85365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101980774	101980774	+	Silent	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALG2-92	NM_033087	exon2	c.C693T	p.I231I	TCTGTTGATGGAG	.	98	25	127	0	.	5	5	0	0	0
EDA	1896	hgsc.bcm.edu	37	X	69243092	69243092	+	Splice_Site	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	EDA-195	NM_001399	exon3	c.526+1G>C	.	AAAAGGGTAAGTT	.	19	2	17	0	.	0	0	0	0	0
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102004858	102004858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	BHLHB9-132	NM_001142530	exon2	c.G935C	p.C312S	TTGCTTGTCCTTG	.	62	19	67	0	.	1	1	0	0	0
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	22363111	22363112	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SLC17A6-580	NM_020346	exon2	c.124_125del	p.42_42del	.	.	112	17	113	0	.	0	0	0	0	0
MORN3	283385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	122107353	122107353	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MORN3-90	NM_173855	exon1	c.37delC	p.L13fs	.	.	236	42	203	0	.	0	0	0	0	0
APOB	338	broad.mit.edu	37	2	21266775	21266783	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	GCAGCGCCA	GCAGCGCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	APOB-175	NM_000384	exon1	c.35_43del	p.12_15del	GCGCAGGCAGCGC	.	8	3	3	0	.	0	0	0	0	0
FKBP9	11328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	33014881	33014881	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	FKBP9-651	NM_007270	exon3	c.455delC	p.T152fs	.	.	95	17	111	0	.	0	0	0	0	0
GPATCH11	253635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37319335	37319336	+	Missense_Mutation	DNP	AA	AA	CT	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	.		exon6	c.A466T	p.EM155DL	GATGAAATGAAGC	.	28.0	9.0	28.0	0.0	.	0	0	0	0	0