Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 CHD5 26038 ucsc.edu 37 1 6211114 6211114 + Missense_Mutation SNP C C A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . CHD5-719 NM_015557 exon7 c.G972T p.K324N CCTCCTCTTGCTC . 40 4 64 0 . 0 0 0 0 0 CLCA2 9635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 86890015 86890015 + Silent SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . CLCA2-155 NM_006536 exon1 c.C85T p.L29L CCATTCCTGGGAG . 55 35 47 0 . 0 0 0 0 0 ADAR 103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 154574741 154574741 + Missense_Mutation SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ADAR-157 NM_001111 exon2 c.T377C p.L126P GAGGAAAGGCAAT . 41 24 94 0 . 24 5 19 0 0 THNSL1 79896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 25312238 25312238 + Missense_Mutation SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . THNSL1-91 NM_024838 exon3 c.C86T p.A29V AACATGCACAGCG . 118 48 80 0 . 2 1 1 0 0 OR4A5 81318 hgsc.bcm.edu 37 11 51411515 51411515 + Missense_Mutation SNP G G A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . OR4A5-92 NM_001005272 exon1 c.C881T p.A294V TCTATAGCATTTC . 38 16 5 1 . 0 0 0 0 0 MYO7A 4647 broad.mit.edu 37 11 76888670 76888670 + Missense_Mutation SNP A A T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . MYO7A-138 NM_001127179 exon19 c.A2263T p.I755F AAAGTCATCCGGG . 11 3 30 0 . 2 1 1 0 0 CCDC84 338657 broad.mit.edu;ucsc.edu 37 11 118869166 118869166 + Silent SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . CCDC84-91 NM_198489 exon2 c.C147T p.R49R CATCCGCGCCGCT . 22 5 30 0 . 7 2 5 0 0 TULP3 7289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 3048537 3048537 + Missense_Mutation SNP A A C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TULP3-226 NM_003324 exon11 c.A1256C p.N419T ATTACAACTACCC . 165 48 170 0 . 61 32 29 0 0 ACAD10 80724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 112183962 112183962 + Silent SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ACAD10-92 NM_001136538 exon15 c.T2223C p.A741A CAAAGCTGAAGGA . 101 34 132 0 . 27 8 19 0 0 GAS6 2621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 114523928 114523928 + Missense_Mutation SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . GAS6-650 NM_000820 exon15 c.A1946G p.N649S CTCCGGTTGACCT . 52 23 69 0 . 39 22 17 0 0 RBM23 55147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 23374814 23374814 + Splice_Site SNP C C G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . RBM23-91 NM_018107 exon6 c.407+1G>C . AACCCACCTGACT . 40 26 99 0 . 2 0 2 0 0 MYEF2 50804 ucsc.edu 37 15 48446066 48446066 + Missense_Mutation SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . MYEF2-523 NM_016132 exon10 c.G1010A p.G337E CCAAGTCCCATCC . 35 4 20 0 . 11 11 0 0 0 SMG1 23049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 18840922 18840922 + Missense_Mutation SNP G G T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SMG1-1160 NM_015092 exon54 c.C9289A p.L3097I TGGGTAGCCCTAT . 70 40 38 0 . 32 11 21 0 0 FTSJD1 55783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 71317552 71317552 + Missense_Mutation SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . FTSJD1-91 NM_018348 exon3 c.G2272A p.E758K CTCTCTCTCTTTG . 67 17 31 0 . 23 16 7 0 0 PLCG2 5336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 81990321 81990321 + Missense_Mutation SNP T T G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . PLCG2-892 NM_002661 exon32 c.T3592G p.S1198A CTTTACTCCTCCT . 77 28 67 0 . 6 6 0 0 0 ZNHIT3 9326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 34849806 34849806 + Missense_Mutation SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ZNHIT3-90 NM_004773 exon4 c.A242G p.D81G ATAGTGATGAGGA . 162 65 128 0 . 59 39 20 0 0 DLX3 1747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48072053 48072053 + Missense_Mutation SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . DLX3-90 NM_005220 exon1 c.C310G p.P104A GGGCTGGCAGCGG . 51 25 69 0 . 0 0 0 0 0 TBCD 6904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 80885835 80885835 + Silent SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TBCD-22 NM_005993 exon30 c.G2664C p.R888R GGCTCGGAGCCAG . 97 33 108 0 . 79 48 31 0 0 NPC1 4864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 21128030 21128030 + Missense_Mutation SNP G G T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . NPC1-92 NM_000271 exon11 c.C1697A p.P566H TTGACAGGGAAGG . 184 72 207 0 . 9 2 7 0 0 RNF165 494470 hgsc.bcm.edu;bcgsc.ca 37 18 44013357 44013357 + Missense_Mutation SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . RNF165-90 NM_152470 exon2 c.A266G p.Q89R CCCTGCAGTTCCA . 58 16 58 0 . 0 0 0 0 0 GRIN3B 116444 hgsc.bcm.edu 37 19 1005500 1005500 + Missense_Mutation SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . GRIN3B-90 NM_138690 exon3 c.T2000C p.V667A CTGCCGTCATGGT . 37 2 57 0 . 62 62 0 0 0 GPX4 2879 ucsc.edu;bcgsc.ca 37 19 1106396 1106396 + Missense_Mutation SNP C C G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . GPX4-90 . . . . TCTCCACAGTTCC . 52 7 116 0 . 106 7 99 0 0 LDLR 3949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 11216253 11216253 + Missense_Mutation SNP A A C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . LDLR-94 NM_001195798 exon4 c.A671C p.D224A GCAAGGACAAATC . 66 28 74 0 . 0 0 0 0 0 AP1M1 8907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 16339616 16339616 + Missense_Mutation SNP C C G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . AP1M1-156 NM_001130524 exon10 c.C960G p.N320K AGCCAACAACGTG . 56 19 78 0 . 135 76 59 0 0 ZNF99 7652 broad.mit.edu 37 19 22941129 22941129 + Missense_Mutation SNP T T G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ZNF99-24 NM_001080409 exon4 c.A1582C p.K528Q TTATCTTATGTTT . 77 3 48 1 . 0 0 0 0 0 ZNF99 7652 hgsc.bcm.edu;broad.mit.edu 37 19 22941154 22941154 + Missense_Mutation SNP C C G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ZNF99-24 NM_001080409 exon4 c.G1557C p.K519N GAAATGCTTAAAA . 63 4 44 1 . 0 0 0 0 0 IRF2BP1 26145 ucsc.edu 37 19 46388582 46388582 + Nonsense_Mutation SNP G G A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . IRF2BP1-90 NM_015649 exon1 c.C451T p.R151X CCCTTCGCGCCCC . 23 4 36 0 . 15 15 0 0 0 NOVA2 4858 broad.mit.edu;bcgsc.ca 37 19 46443735 46443735 + Missense_Mutation SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . NOVA2-226 NM_002516 exon4 c.T865C p.Y289H AGCCGTAACTTGC . 24 4 21 0 . 0 0 0 0 0 TBC1D8 11138 hgsc.bcm.edu 37 2 101706726 101706726 + Silent SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TBC1D8-25 NM_001102426 exon2 c.C228G p.P76P TGCTATGGGAGAA . 44 3 64 0 . 1 1 0 0 0 GORASP2 26003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 171806790 171806790 + Missense_Mutation SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . GORASP2-135 NM_015530 exon4 c.T425C p.V142A ATACAGTCATGAA . 76 32 29 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179411556 179411556 + Silent SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TTN-636 NM_001267550 exon341 c.T94599C p.D31533D GCCTCCATCATAC . 44 22 17 0 . 0 0 0 0 0 SF3B1 23451 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 198269882 198269882 + Missense_Mutation SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SF3B1-140 NM_012433 exon11 c.C1457G p.T486R CTAAGTGTTGATT . 42 4 29 0 . 108 108 0 0 0 SATB2 23314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 200193570 200193570 + Missense_Mutation SNP C C A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SATB2-91 NM_015265 exon9 c.G1237T p.V413L GGTTTACTAGAAG . 46 11 16 0 . 16 8 8 0 0 NOP58 51602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 203155146 203155146 + Silent SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . NOP58-90 NM_015934 exon7 c.T600C p.D200D TTCAGATAATTTA . 76 31 58 0 . 24 10 14 0 0 UBOX5 22888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 3102965 3102965 + Missense_Mutation SNP G G A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . UBOX5-227 NM_014948 exon3 c.C320T p.P107L ACAGATGGCTCAG . 73 23 116 0 . 8 6 2 0 0 NFATC2 4773 ucsc.edu 37 20 50049132 50049132 + Missense_Mutation SNP G G A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . NFATC2-92 NM_012340 exon9 c.C2194T p.R732C CCGTGCGGAACTG . 35 4 57 0 . 2 2 0 0 0 BCAS1 8537 bcgsc.ca 37 20 52645037 52645037 + Missense_Mutation SNP T T C rs143209009 TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . BCAS1-652 NM_003657 exon4 c.A617G p.K206R GGCACCTTTTCCT . 231 6 239 0 T|1.000;C|0.000 0 0 0 0 0 TAF4 6874 hgsc.bcm.edu 37 20 60585136 60585136 + Missense_Mutation SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TAF4-93 NM_003185 exon4 c.T1727C p.V576A CCTGGTACCGTGC . 49 3 82 0 . 12 11 0 1 0 SETD4 54093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 37418117 37418117 + Silent SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SETD4-154 NM_001007259 exon6 c.A489G p.R163R GTGGGCTCTCTGC . 204 90 200 0 . 24 14 10 0 0 SIK1 150094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 44841223 44841223 + Missense_Mutation SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SIK1-346 NM_173354 exon6 c.A524G p.K175R CCTGACTTGTAGA . 119 46 168 0 . 4 4 0 0 0 PHF21B 112885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 45312440 45312440 + Missense_Mutation SNP G G T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . PHF21B-93 NM_138415 exon4 c.C284A p.P95H GTTGGGGGCTGCT . 85 30 134 0 . 0 0 0 0 0 GALNT15 117248 hgsc.bcm.edu 37 3 16217029 16217029 + Missense_Mutation SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . . NM_054110 exon1 c.G371C p.R124T AGCCAAGGAGGCA . 36 2 42 0 . 4 4 0 0 0 PBRM1 55193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52588791 52588791 + Missense_Mutation SNP G G T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . PBRM1-575 NM_018313 exon27 c.C4237A p.P1413T GGTGGGGTGGAGG . 39 19 47 0 . 6 2 4 0 0 IL17RB 55540 hgsc.bcm.edu 37 3 53891719 53891719 + Splice_Site SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . IL17RB-229 NM_018725 exon8 c.747+2T>C . TGCAGGTAAAGTT . 57 3 64 0 . 215 215 0 0 0 ADCY5 111 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 123010068 123010068 + Missense_Mutation SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ADCY5-94 NM_183357 exon18 c.G3219A p.M1073I GGCGAACATGACC . 74 24 102 0 . 0 0 0 0 0 CLDN18 51208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 137742626 137742626 + Missense_Mutation SNP A A T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . CLDN18-92 NM_016369 exon2 c.A347T p.N116I AAGCCAACATGAC . 68 22 89 0 . 0 0 0 0 0 TMEM41A 90407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 185209397 185209397 + Missense_Mutation SNP T T A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TMEM41A-90 NM_080652 exon5 c.A723T p.K241N ACTAAATTTTTTA . 95 41 75 0 . 19 11 8 0 0 ZNF718 255403 hgsc.bcm.edu 37 4 154974 154974 + Missense_Mutation SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . . NM_001039127 exon4 c.G499C p.G167R TATACTGGAGATA . 11 2 5 0 . 3 3 0 0 0 NOP14 8602 ucsc.edu 37 4 2945921 2945921 + Missense_Mutation SNP C C A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . NOP14-91 NM_003703 exon13 c.G1770T p.K590N CAGGCCCTTCACC . 46 5 79 0 . 8 8 0 0 0 ATP10D 57205 broad.mit.edu 37 4 47538506 47538506 + Silent SNP C C A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ATP10D-93 NM_020453 exon8 c.C1068A p.P356P TGTTCCCGAGCCT . 284 9 101 0 . 17 17 0 0 0 SLC10A6 345274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 87749228 87749228 + Missense_Mutation SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SLC10A6-22 NM_197965 exon4 c.C679G p.L227V TGGTCAGAAGGGT . 45 16 55 0 . 0 0 0 0 0 CAMK2D 817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 114434488 114434488 + Silent SNP G G A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . CAMK2D-334 NM_172128 exon12 c.C942T p.F314F ACCTGAGAAATTC . 113 42 84 0 . 2 1 1 0 0 TLR3 7098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 187004092 187004092 + Missense_Mutation SNP A A C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TLR3-524 NM_003265 exon4 c.A1252C p.K418Q AAGAATAAAATCT . 79 26 62 0 . 21 11 10 0 0 ZFR 51663 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 32403408 32403408 + Missense_Mutation SNP G G A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ZFR-90 NM_016107 exon8 c.C1319T p.S440L GGCTTTGAAGCAG . 160 70 102 0 . 41 21 20 0 0 PIK3R1 5295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 67576767 67576767 + Silent SNP T T G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . PIK3R1-4332 NM_181523 exon7 c.T849G p.T283T TAATACTGAAAAC . 61 18 41 0 . 5 4 1 0 0 PAPD4 167153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 78975410 78975410 + Missense_Mutation SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . PAPD4-69 NM_173797 exon14 c.G1217C p.S406T GGAATAGTCAAAT . 73 33 57 0 . 0 0 0 0 0 SLIT3 6586 hgsc.bcm.edu 37 5 168112858 168112858 + Missense_Mutation SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SLIT3-95 NM_001271946 exon31 c.A3410G p.N1137S GCCCCGTTCTGGC . 28 2 28 1 . 5 5 0 0 0 NELFE 7936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31922209 31922209 + Silent SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . . NM_002904 exon8 c.A753G p.S251S AGGGAATGAATCC . 88 30 109 0 . 1 1 0 0 0 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 66204808 66204808 + Missense_Mutation SNP T T G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . EYS-660 NM_001142801 exon4 c.A496C p.N166H TCACATTTAGTCG . 97 32 54 0 . 0 0 0 0 0 SLC22A16 85413 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 110746234 110746234 + Nonsense_Mutation SNP C C A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SLC22A16-91 NM_033125 exon8 c.G1576T p.E526X GGGTTTCTGGAAG . 135 48 132 1 . 0 0 0 0 0 ETV1 2115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 13971323 13971323 + Silent SNP C C G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ETV1-659 NM_004956 exon9 c.G606C p.T202T TGGCATCGTCGGC . 45 17 46 0 . 2 1 1 0 0 SUN3 256979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 48035693 48035693 + Missense_Mutation SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SUN3-514 NM_152782 exon8 c.G628A p.A210T ATTTTGCTTTATT . 126 40 115 0 . 0 0 0 0 0 PEX1 5189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 92151473 92151473 + Silent SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . PEX1-91 NM_000466 exon2 c.T216C p.N72N AGCCACATTTTCA . 130 55 90 0 . 9 3 6 0 0 TUSC3 7991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 15508312 15508312 + Missense_Mutation SNP G G A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TUSC3-516 NM_178234 exon3 c.G415A p.V139I ACAGACGTTTTTC . 222 96 163 0 . 0 0 0 0 0 PSD3 23362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 18430149 18430149 + Missense_Mutation SNP T T A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . PSD3-93 NM_015310 exon14 c.A2673T p.K891N ATTGATTTTGTTT . 225 73 115 0 . 3 2 1 0 0 TRIM35 23087 broad.mit.edu;bcgsc.ca 37 8 27168425 27168425 + Missense_Mutation SNP G G T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . TRIM35-226 NM_171982 exon1 c.C328A p.L110I AGAAGAGGCTGAG . 24 9 42 0 . 9 5 4 0 0 ZNF395 55893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 28206721 28206721 + Missense_Mutation SNP T T C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ZNF395-90 NM_018660 exon9 c.A1351G p.S451G GCTCGCTGAAGCT . 70 22 110 0 . 53 36 17 0 0 DGAT1 8694 hgsc.bcm.edu 37 8 145542536 145542536 + Missense_Mutation SNP T T G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . . NM_012079 exon4 c.A377C p.K126T GGATCCTTCAGGA . 31 2 37 0 . 36 36 0 0 0 ARID3C 138715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 34622092 34622092 + Missense_Mutation SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . ARID3C-91 NM_001017363 exon6 c.G1063A p.G355R GAGGCCCATCCAG . 130 44 184 0 . 0 0 0 0 0 RUSC2 9853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 35547391 35547391 + Missense_Mutation SNP G G C novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . RUSC2-91 NM_014806 exon2 c.G873C p.M291I CAAGATGCATGGC . 93 31 150 0 . 14 5 9 0 0 NANS 54187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 100840514 100840514 + Missense_Mutation SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . NANS-91 NM_018946 exon4 c.A488G p.D163G CAATGGACACCAT . 127 47 167 0 . 63 52 11 0 0 KLHL4 56062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 86773063 86773063 + Missense_Mutation SNP C C G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . KLHL4-133 NM_019117 exon1 c.C167G p.S56C GCCACTCTCGGGA . 31 26 16 0 . 1 0 1 0 0 NRK 203447 broad.mit.edu 37 X 105167297 105167297 + Missense_Mutation SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . NRK-630 NM_198465 exon18 c.A2798G p.D933G ATGGTGATGATGA . 7 2 10 0 . 0 0 0 0 0 GLUD2 2747 ucsc.edu 37 X 120182120 120182120 + Silent SNP C C T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . GLUD2-131 NM_012084 exon1 c.C582T p.T194T CTATACCGAAAAT . 81 1 72 0 . 5 5 0 0 0 CDR1 1038 hgsc.bcm.edu 37 X 139866440 139866440 + Missense_Mutation SNP A A G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . CDR1-130 NM_004065 exon1 c.T92C p.V31A AAAGGTACGTCTT . 93 6 46 2 . 1 1 0 0 0 RNF165 494470 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 44013351 44013353 + In_Frame_Del DEL CCC CCC - novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 CCC CCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . RNF165-90 NM_152470 exon2 c.260_262del p.87_88del . . 49 15 51 0 . 0 0 0 0 0 SAMD4B 55095 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 39868382 39868391 + Frame_Shift_Del DEL TCCCACTGAT TCCCACTGAT - novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 TCCCACTGAT TCCCACTGAT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . SAMD4B-90 NM_018028 exon10 c.1362_1371del p.454_457del . . 61 10 110 0 . 0 0 0 0 0 DALRD3 55152 broad.mit.edu 37 3 49055671 49055671 + Frame_Shift_Del DEL G G - novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . DALRD3-90 NM_001009996 exon2 c.246delC p.P82fs ACCCGCGGGGGTC . 6 2 5 0 . 0 0 0 0 0 PROM1 8842 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 15989284 15989287 + Frame_Shift_Del DEL ACCA ACCA - novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 ACCA ACCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . PROM1-207 NM_006017 exon19 c.2129_2130del p.710_710del . . 233 69 228 0 . 0 0 0 0 0 HDGF 3068 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 156715103 156715104 + Frame_Shift_Ins INS - - A novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . HDGF-226 NM_001126050 exon2 c.198_199insT p.F66fs . . 21 13 42 0 . 0 0 0 0 0 MAST3 23031 broad.mit.edu;bcgsc.ca 37 19 18254602 18254603 + Frame_Shift_Ins INS - - CT novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . MAST3-502 NM_015016 exon21 c.2282_2283insCT p.S761fs GATCCTCCTGTCA . 23 9 37 0 . 0 0 0 0 0 HAO1 54363 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 7886831 7886832 + In_Frame_Ins INS - - TTT novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . HAO1-93 NM_017545 exon4 c.691_692insAAA p.L231delinsKL . . 183 51 120 0 . 0 0 0 0 0 BPIFB2 80341 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 31604905 31604906 + Frame_Shift_Ins INS - - T novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . . NM_025227 exon7 c.574_575insT p.I192fs . . 111 35 143 0 . 0 0 0 0 0 DOLK 22845 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 131708944 131708945 + Frame_Shift_Ins INS - - G novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . DOLK-90 NM_014908 exon1 c.639_640insC p.L213fs . . 105 36 146 0 . 0 0 0 0 0 GAGE2A 729447 broad.mit.edu 37 X 49208295 49208296 + In_Frame_Ins INS - - TAT rs33925578 TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . . NM_001127212 exon2 c.24_25insTAT p.T8delinsTY ATCGACCTATCGG . 542 2 601 0 . 0 0 0 0 0 COL18A1 80781 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 46911142 46911143 + Missense_Mutation DNP GA GA AT novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 GA GA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . COL18A1 exon21 c.A2612T p.D1106I AGGGAGATCCAGG . 51.0 18.0 65.0 0.0 . 0 0 0 0 0 CCT7 10574 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 73471795 73471796 + Nonsense_Mutation DNP GC GC TT novel TCGA-A4-7583-01A-11D-2136-08 TCGA-A4-7583-10A-01D-2136-08 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b40c1178-c913-4b63-8863-f631473fffde 0a94c473-a646-42ca-9537-145517302063 . CCT7-90 NM_006429 exon6 c.C571T p.Q191* TTGCTGCAGCTTA . 35 11 40 0 . 0 0 0 0 0