Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 TMEM200B 399474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 29447533 29447533 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . TMEM200B-68 NM_001171868 exon2 c.C808T p.L270F CCCCAAGGAGGAG . 34 14 72 0 . 11 4 7 0 0 ABCA4 24 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 94548962 94548962 + Silent SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ABCA4-162 NM_000350 exon7 c.C804T p.I268I CAGATTGATACCT . 257 119 393 1 . 0 0 0 0 0 PTPN22 26191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 114402065 114402065 + Silent SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PTPN22-227 NM_001193431 exon2 c.T105C p.S35S CTTGGTAGATTGC . 97 46 151 0 . 0 0 0 0 0 RPS6KC1 26750 hgsc.bcm.edu 37 1 213244385 213244385 + Splice_Site SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . RPS6KC1-417 NM_012424 exon2 c.141+2T>C . AGGAGGTAACATT . 11 2 25 0 . 0 0 0 0 0 ADCK3 56997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 227174187 227174187 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ADCK3-361 NM_020247 exon15 c.A1693G p.I565V ATCCTCATCCTGG . 97 45 134 0 . 30 12 18 0 0 PCNXL2 80003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 233134020 233134020 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PCNXL2-91 NM_014801 exon32 c.C5768T p.S1923F TCACAGGATGACA . 18 9 28 0 . 10 8 2 0 0 PCNXL2 80003 hgsc.bcm.edu 37 1 233225880 233225880 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PCNXL2-91 NM_014801 exon23 c.A4003G p.S1335G ATGGGCTCAATGG . 51 3 75 0 . 1 1 0 0 0 ZMYND11 10771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 287963 287963 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ZMYND11-90 NM_006624 exon10 c.A834G p.I278M CCAGATACCTAAT . 46 17 76 0 . 1 0 1 0 0 PLXDC2 84898 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 20357165 20357165 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PLXDC2-93 NM_032812 exon4 c.G538A p.G180R GCAACCGGGGGTA . 29 4 56 0 . 0 0 0 0 0 PPRC1 23082 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 103900396 103900396 + Missense_Mutation SNP G G A rs17847386 TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PPRC1-227 NM_015062 exon5 c.G2131A p.V711M CTCCTCGTGGAGT . 64 6 101 0 G|0.999;T|0.001 3 3 0 0 0 COPB1 1315 hgsc.bcm.edu 37 11 14510132 14510132 + Splice_Site SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . COPB1-91 NM_001144062 exon7 c.607-2A>G . CGATCCTAAAAAA . 20 2 23 0 . 0 0 0 0 0 SLC5A12 159963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 26743059 26743059 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC5A12-92 NM_178498 exon1 c.T203C p.L68P GTCCCCAGGACCG . 50 22 57 1 . 2 0 2 0 0 SLC43A3 29015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 57177469 57177469 + Missense_Mutation SNP T T G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC43A3-90 NM_017611 exon12 c.A1186C p.I396L GCAGGATGAAGGT . 24 7 47 0 . 5 5 0 0 0 USP28 57646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 113705056 113705056 + Missense_Mutation SNP G G C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . USP28-706 NM_020886 exon6 c.C536G p.S179C AAGAGAGACTGAA . 34 18 47 0 . 0 0 0 0 0 SIDT2 51092 broad.mit.edu;bcgsc.ca 37 11 117063308 117063308 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SIDT2-90 NM_001040455 exon21 c.G2000A p.R667H TCCGCCGCATCCT . 75 5 114 0 . 9 9 0 0 0 DPAGT1 1798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 118969112 118969112 + Splice_Site SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . DPAGT1-221 NM_001382 exon6 c.728+1G>A . TACTTACCAGTTG . 101 50 175 0 . 2 0 2 0 0 TFCP2 7024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 51495806 51495806 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . TFCP2-91 NM_001173452 exon11 c.G1063A p.A355T AATCTGCCCCTGG . 65 15 93 0 . 0 0 0 0 0 SLC39A5 283375 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56626598 56626598 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC39A5-92 NM_173596 exon5 c.A413G p.D138G GCCTGGACCTCCT . 83 32 86 0 . 35 28 7 0 0 GLI1 2735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 57864354 57864354 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . GLI1-722 NM_005269 exon12 c.C1831T p.R611W CTGGATCGGATAG . 57 21 77 0 . 0 0 0 0 0 CCDC41 51134 hgsc.bcm.edu 37 12 94769760 94769760 + Missense_Mutation SNP G G A rs79068264 TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . CCDC41-90 NM_016122 exon8 c.C835T p.R279C CCAAACGTTCTGC . 20 7 12 2 G|0.998;A|0.002 0 0 0 0 0 NAA16 79612 hgsc.bcm.edu;bcgsc.ca 37 13 41894809 41894809 + Missense_Mutation SNP A A T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . NAA16-90 NM_001110798 exon4 c.A251T p.H84L GTTGGCATGTATA . 58 4 72 0 . 0 0 0 0 0 MDGA2 161357 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 47351354 47351354 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MDGA2-95 NM_001113498 exon11 c.C2309A p.T770K TTATATGTAATTA . 29 7 25 0 . 0 0 0 0 0 KCNK13 56659 hgsc.bcm.edu;broad.mit.edu 37 14 90528673 90528673 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . KCNK13-91 NM_022054 exon1 c.G124A p.E42K GCGCTGGAGCTGG . 7 4 12 0 . 0 0 0 0 0 DYNC1H1 1778 broad.mit.edu 37 14 102483550 102483550 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . DYNC1H1-98 NM_001376 exon39 c.G7974T p.W2658C AAAGTGGCTGGTG . 79 5 129 0 . 6 6 0 0 0 TECPR2 9895 broad.mit.edu 37 14 102910132 102910132 + Silent SNP G G A rs202209194 alternate_allele TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . TECPR2-92 NM_001172631 exon12 c.G2901A p.P967P CTGTCCGGAAGGC . 40 3 69 0 G|0.999;C|0.000 7 7 0 0 0 MAPKBP1 23005 ucsc.edu;bcgsc.ca 37 15 42117531 42117531 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MAPKBP1-589 NM_001128608 exon32 c.G4442A p.S1481N CAGGCAGCAGCCC . 38 4 67 0 . 5 5 0 0 0 PKD1 5310 hgsc.bcm.edu;broad.mit.edu 37 16 2155927 2155927 + Missense_Mutation SNP C C G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PKD1-91 NM_000296 exon20 c.G7802C p.R2601P GCCTGCCGCAGCA . 52 7 74 1 . 13 11 2 0 0 PRSS21 10942 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 2868950 2868950 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PRSS21-92 NM_144957 exon4 c.G530T p.G177V GCTGGGGGTACAT . 44 5 87 0 . 6 6 0 0 0 RRN3 54700 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 15159184 15159184 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . RRN3-91 NM_018427 exon16 c.A1598G p.N533S TGGCGATTGTTCC . 77 13 105 0 . 6 6 0 0 0 TANGO6 79613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 68909060 68909060 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_024562 exon5 c.G998T p.G333V CAGCGGGAGCAGC . 37 17 97 0 . 0 0 0 0 0 CLUH 23277 hgsc.bcm.edu;broad.mit.edu 37 17 2601454 2601454 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_015229 exon10 c.T1583C p.L528P ATCTTGAGGGGCC . 9 7 9 0 . 27 5 22 0 0 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 11772554 11772554 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . DNAH9-168 NM_001372 exon51 c.C10037T p.S3346F CCATCTCCCTTGC . 91 28 118 0 . 0 0 0 0 0 KRTAP4-5 85289 hgsc.bcm.edu 37 17 39305911 39305911 + Missense_Mutation SNP G G A rs141058010 TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . KRTAP4-5-90 NM_033188 exon1 c.C109T p.R37C TGGGGCGGCAGCA . 78 7 86 1 G|1.000;A|0.000 0 0 0 0 0 SLC16A5 9121 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 73096278 73096278 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC16A5-90 NM_001271765 exon5 c.G520T p.V174F TTCCTTGTCTTCG . 49 4 77 0 . 1 0 1 0 0 FAM108A1 81926 hgsc.bcm.edu 37 19 1881550 1881550 + Silent SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . FAM108A1-90 NM_031213 exon2 c.C16T p.L6L CACTCAGCGACAG . 21 6 36 1 . 3 3 0 0 0 MUC16 94025 broad.mit.edu 37 19 9088433 9088433 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MUC16-566 NM_024690 exon1 c.G3382A p.A1128T TCAGAGCTGAGCT . 61 4 69 0 . 0 0 0 0 0 ZNF439 90594 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 11978986 11978986 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ZNF439-91 NM_152262 exon3 c.T1102C p.S368P GCCAAGTCATTTC . 60 4 109 0 . 15 15 0 0 0 ZNF285 26974 hgsc.bcm.edu 37 19 44892065 44892065 + Missense_Mutation SNP A A C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ZNF285-94 NM_152354 exon4 c.T342G p.I114M AAGAGAAATGCCT . 114 6 163 2 . 0 0 0 0 0 KPTN 11133 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 47987312 47987312 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . KPTN-91 NM_007059 exon1 c.G106A p.G36S GCCCGCCGGCGCC . 43 17 64 0 . 0 0 0 0 0 LILRB4 11006 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 55176288 55176288 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . LILRB4-93 NM_006847 exon5 c.G694A p.V232I AGGTCCGTCTCAA . 31 5 32 0 . 0 0 0 0 0 NLRP13 126204 hgsc.bcm.edu 37 19 56416341 56416341 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . NLRP13-211 NM_176810 exon8 c.T2585C p.L862P TGAGTCAGGGCCG . 43 3 87 0 . 0 0 0 0 0 USP34 9736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 61454345 61454345 + Silent SNP A A C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . USP34-579 NM_014709 exon62 c.T7452G p.V2484V CACTTCAACTTGA . 11 6 23 0 . 0 0 0 0 0 GCFC2 6936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 75929399 75929399 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_001201335 exon3 c.C545A p.P182H TCATCAGGCTCAC . 135 59 202 0 . 5 2 3 0 0 IL1R1 3554 hgsc.bcm.edu 37 2 102792833 102792833 + Missense_Mutation SNP G G C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . IL1R1-523 NM_000877 exon11 c.G1324C p.E442Q ATTAATGAAAACG . 36 2 52 0 . 8 8 0 0 0 HNMT 3176 hgsc.bcm.edu;broad.mit.edu 37 2 138771361 138771361 + Missense_Mutation SNP C C A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . HNMT-91 NM_006895 exon6 c.C540A p.D180E CTGGGACAAGCTG . 22 6 26 0 . 32 15 17 0 0 SCN2A 6326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 166210795 166210795 + Missense_Mutation SNP A A C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SCN2A-142 NM_001040143 exon16 c.A3013C p.I1005L CTCCAGATTGCTG . 154 66 219 0 . 0 0 0 0 0 CERS6 253782 broad.mit.edu 37 2 169571584 169571584 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_001256126 exon7 c.C683T p.A228V ATATGGCCCGAGT . 76 4 101 1 . 0 0 0 0 0 PDE11A 50940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 178936278 178936278 + Missense_Mutation SNP G G T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PDE11A-93 NM_016953 exon1 c.C887A p.T296K TTGACCGTTTCTC . 100 52 169 0 . 0 0 0 0 0 MARS2 92935 hgsc.bcm.edu;broad.mit.edu 37 2 198571900 198571900 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MARS2-92 NM_138395 exon1 c.C1771T p.H591Y AAAGCCCACCGGA . 98 8 149 0 . 2 2 0 0 0 MKKS 8195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 10385928 10385928 + Missense_Mutation SNP C C A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MKKS-90 NM_170784 exon6 c.G1680T p.L560F AAGATCCAAAATC . 32 9 44 0 . 21 18 3 0 0 LAMA5 3911 hgsc.bcm.edu 37 20 60891744 60891744 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . LAMA5-93 NM_005560 exon57 c.A7739G p.Q2580R CTCTGCTGTTCCT . 21 2 41 0 . 27 27 0 0 0 PRKCD 5580 ucsc.edu 37 3 53212505 53212505 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PRKCD-1378 NM_212539 exon2 c.G67A p.A23T GACGAGGCGAACC . 43 4 86 0 . 1 1 0 0 0 PARP9 83666 hgsc.bcm.edu 37 3 122259457 122259457 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PARP9-525 NM_031458 exon8 c.A1732G p.S578G CTGGGCTGATAAT . 38 2 81 0 . 22 22 0 0 0 KIAA0226 9711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 197427622 197427622 + Missense_Mutation SNP C C G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . KIAA0226-22 NM_014687 exon7 c.G1123C p.G375R CCCCACCTCCTTC . 36 11 76 0 . 1 0 1 0 0 PCDHGB7 56099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140798373 140798373 + Missense_Mutation SNP C C G rs200530054 alternate_allele TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PCDHGB7-29 NM_018927 exon1 c.C947G p.T316R GATATACGATAAA . 24 4 27 0 C|0.999;T|0.000 0 0 0 0 0 ARHGEF37 389337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 149006787 149006787 + Missense_Mutation SNP A A G novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ARHGEF37-90 NM_001001669 exon11 c.A1613G p.N538S TTCAAAACAAGGA . 116 43 251 0 . 2 1 1 0 0 PRSS16 10279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 27222771 27222771 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PRSS16-94 NM_005865 exon11 c.C1337T p.T446I GGGACACAGACCC . 184 83 266 0 . 0 0 0 0 0 HIST1H1B 3009 broad.mit.edu 37 6 27835118 27835118 + Missense_Mutation SNP C C A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . HIST1H1B-585 NM_005322 exon1 c.G190T p.A64S TAAGGGCTGCCAA . 137 5 230 0 . 0 0 0 0 0 HSPA1L 3305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31779708 31779708 + Silent SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . HSPA1L-230 NM_005527 exon2 c.C42T p.G14G GGTGGTGCCCAGG . 36 16 85 0 . 0 0 0 0 0 CD109 135228 hgsc.bcm.edu 37 6 74524713 74524713 + Missense_Mutation SNP G G C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . CD109-155 NM_133493 exon30 c.G3778C p.V1260L AATGTTGTATATA . 32 2 48 0 . 0 0 0 0 0 SP8 221833 hgsc.bcm.edu 37 7 20824445 20824445 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SP8-91 NM_182700 exon2 c.G991A p.A331T GCGGCGCCGAAGG . 4 3 4 2 . 0 0 0 0 0 WBSCR17 64409 broad.mit.edu;bcgsc.ca 37 7 71142235 71142235 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . WBSCR17-96 NM_022479 exon9 c.G1444A p.G482R GACCAGGGGCCGC . 517 16 457 0 . 0 0 0 0 0 SLC26A5 375611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 103029857 103029857 + Silent SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC26A5-91 NM_206883 exon13 c.C1326T p.A442A CACAATGGCCGAC . 78 30 78 0 . 0 0 0 0 0 PODXL 5420 hgsc.bcm.edu 37 7 131241089 131241089 + Silent SNP C C T rs116656523 TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PODXL-136 NM_001018111 exon1 c.G30A p.L10L TAGCAGCAGCGCC . 14 7 5 2 C|0.993;T|0.007 0 0 0 0 0 ZNF707 286075 broad.mit.edu 37 8 144776267 144776267 + Missense_Mutation SNP G G A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . ZNF707-67 NM_001100598 exon6 c.G683A p.R228H ACACGCGCGAGAA . 14 3 17 0 . 8 8 0 0 0 MAPK15 225689 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 144801161 144801161 + Splice_Site SNP A A T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . MAPK15-1378 NM_139021 exon6 c.418-2A>T . CTCTGCAGCCGTC . 12 7 26 0 . 8 0 8 0 0 SLC1A1 6505 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 4585458 4585458 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SLC1A1-514 NM_004170 exon12 c.T1475C p.L492P CAATCCTTGACAA . 56 27 84 0 . 18 9 9 0 0 APTX 54840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 32988092 32988092 + Nonsense_Mutation SNP T T A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . APTX-91 NM_001195252 exon3 c.A211T p.K71X TTACCTTGACATA . 76 25 132 0 . 0 0 0 0 0 PTCH1 5727 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 98268787 98268787 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PTCH1-3532 NM_000264 exon2 c.G296A p.G99D AACTTGCCGCAGT . 36 17 77 0 . 0 0 0 0 0 GYG2 8908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 2772026 2772026 + Missense_Mutation SNP T T A novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . GYG2-132 NM_003918 exon5 c.T248A p.I83N GGGTCATCCTCTC . 47 43 47 0 . 0 0 0 0 0 SYP 6855 bcgsc.ca 37 X 49050639 49050639 + Missense_Mutation SNP T T C novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SYP-556 NM_003179 exon4 c.A407G p.N136S CCTTTGTTATTCT . 25 19 51 0 . 3 3 0 0 0 PHKA1 5255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 71829514 71829514 + Missense_Mutation SNP C C T novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PHKA1-134 NM_002637 exon23 c.G2566A p.V856I GTCCTACTGTCAA . 53 47 80 0 . 1 0 1 0 0 CRNN 49860 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 152382377 152382391 + In_Frame_Del DEL TCAGGGTTGCTCACT TCAGGGTTGCTCACT - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 TCAGGGTTGCTCACT TCAGGGTTGCTCACT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . CRNN-93 NM_016190 exon3 c.1167_1181del p.389_394del . . 73 23 149 0 . 0 0 0 0 0 SEC23A 10484 broad.mit.edu;bcgsc.ca 37 14 39514526 39514526 + Frame_Shift_Del DEL A A - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SEC23A-95 NM_006364 exon16 c.1740delT p.F580fs AAACATAAACTGT . 25 8 32 0 . 0 0 0 0 0 ZNF226 7769 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 44680650 44680650 + Frame_Shift_Del DEL T T - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . . NM_001032372 exon6 c.1235delT p.V412fs . . 46 19 68 0 . 0 0 0 0 0 SHANK1 50944 broad.mit.edu 37 19 51171508 51171508 + Frame_Shift_Del DEL C C - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SHANK1-153 NM_016148 exon22 c.3709delG p.V1237fs CCCCCACCAGGGC . 6 2 19 0 . 0 0 0 0 0 PREB 10113 bcgsc.ca 37 2 27355508 27355521 + Frame_Shift_Del DEL TGGGTCCATTTTCT TGGGTCCATTTTCT - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 TGGGTCCATTTTCT TGGGTCCATTTTCT - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . PREB-91 NM_013388 exon5 c.702_715del p.234_239del AAAAGGTGGGTCC . 35 5 93 0 . 0 0 0 0 0 NCAPH 23397 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 97017659 97017669 + Frame_Shift_Del DEL AGAAGTGAACT AGAAGTGAACT - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 AGAAGTGAACT AGAAGTGAACT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . NCAPH-228 NM_015341 exon7 c.811_821del p.271_274del . . 55 17 112 0 . 0 0 0 0 0 TRIO 7204 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 14387672 14387672 + Frame_Shift_Del DEL T T - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . TRIO-562 NM_007118 exon22 c.3696delT p.S1232fs . . 94 38 193 0 . 0 0 0 0 0 SYP 6855 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 49050637 49050638 + Frame_Shift_Del DEL TG TG - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SYP-556 NM_003179 exon4 c.408_409del p.136_137del . . 27 20 51 0 . 0 0 0 0 0 SYP 6855 hgsc.bcm.edu 37 X 49050637 49050639 + In_Frame_Del DEL TGT TGT - novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 TGT TGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . SYP-556 NM_003179 exon4 c.407_409del p.136_137del . . 28 19 52 0 . 0 0 0 0 0 UGT2A3 79799 broad.mit.edu 37 4 69817176 69817177 + Frame_Shift_Ins INS - - AA novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . UGT2A3-92 NM_024743 exon1 c.303_304insTT p.L101fs GGTTGATAAGCCT . 45 9 36 0 . 0 0 0 0 0 NCAPH 23397 bcgsc.ca 37 2 97017653 97017654 + Missense_Mutation DNP GA GA TT novel TCGA-A4-7732-01A-11D-2136-08 TCGA-A4-7732-10A-01D-2136-08 GA GA - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3f779f68-566c-4996-8aab-4ca7af95061c b7fc117a-dadb-4f07-8dce-04bf472d7559 . NCAPH-228 NM_015341 exon7 c.A806T p.D269F GCCAGGACTACAG . 50 17 104 0 . 0 0 0 0 0